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Items: 1 to 20 of 86

1.

AMAR-seq: automated multimodal sequencing of DNA methylation, chromatin accessibility, and RNA expression with single-cell resolution

(Submitter supplied) Parallel single-cell multimodal sequencing is the most intuitive and precise tool for cellular status research. In this study, we propose AMAR-seq to automate methylation, chromatin accessibility and RNA sequencing on a chip with single-cell precision. We validated the accuracy and robustness of AMAR-seq in comparison with standard single-omics methods. The high gene detection rate and genome coverage of AMAR-seq enabled us to establish a genome-wide gene expression regulatory atlas, implement single-cell copy number variation analysis, and construct a single-gene, single-base resolution gene expression, DNA methylation, and chromatin accessibility landscape. more...
Organism:
Mus musculus; Homo sapiens
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other
Platforms:
GPL24247 GPL24676
83 Samples
Download data: COV, TXT
Series
Accession:
GSE261788
ID:
200261788
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

Illumina NovaSeq 6000 (Mus musculus)

Platform
Accession:
GPL24247
ID:
100024247
4.

smart_seq2_4

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152009
ID:
308152009
5.

smart_seq2_3

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152008
ID:
308152008
6.

smart_seq2_2

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152007
ID:
308152007
7.

smart_seq2_1

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152006
ID:
308152006
8.

bulk_RNA_2

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152005
ID:
308152005
9.

bulk_RNA_1

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152004
ID:
308152004
10.

AMAR_RNA_12

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152003
ID:
308152003
11.

AMAR_RNA_11

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152002
ID:
308152002
12.

AMAR_RNA_10

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152001
ID:
308152001
13.

AMAR_RNA_9

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8152000
ID:
308152000
14.

AMAR_RNA_8

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151999
ID:
308151999
15.

AMAR_RNA_7

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151998
ID:
308151998
16.

AMAR_RNA_6

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151997
ID:
308151997
17.

AMAR_RNA_5

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151996
ID:
308151996
18.

AMAR_RNA_4

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151995
ID:
308151995
19.

AMAR_RNA_3

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151994
ID:
308151994
20.

AMAR_RNA_2

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL24676
Series:
GSE261788
Download data: TXT
Sample
Accession:
GSM8151993
ID:
308151993
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Supplemental Content

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