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Items: 20

1.

Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells

(Submitter supplied) Recent studies of genome-wide chromatin interactions have revealed that the human genome is partitioned into many self-associating topological domains. The boundary sequences are enriched for binding sites of CTCF and the cohesin complex, implicating these two factors in the establishment or maintenance of topological domains. To determine the role of cohesin and CTCF in higher order chromatin architecture in human cells, we proteolytically cleaved the cohesin complex from interphase chromatin and examined changes in chromosomal organization as well as transcriptome. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platform:
GPL11154
18 Samples
Download data: BW, RPKM, TXT
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Input ChIP-seq, RAD21cv HEK293, TEV Treated

Organism:
Homo sapiens
Source name:
Input ChIP-seq, RAD21cv HEK293, TEV Treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW
Sample
Accession:
GSM1081543
ID:
301081543
4.

Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated

Organism:
Homo sapiens
Source name:
Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW
Sample
Accession:
GSM1081542
ID:
301081542
5.

mRNA-seq, HEK293 siRNA CTCF, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081541
ID:
301081541
6.

mRNA-seq, HEK293 siRNA CTCF, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081540
ID:
301081540
7.

mRNA-seq, HEK293 siRNA Control, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081539
ID:
301081539
8.

mRNA-seq, HEK293 siRNA Control, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081538
ID:
301081538
9.

mRNA-seq, RAD21cv HEK293, HRV treated, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081537
ID:
301081537
10.

mRNA-seq, RAD21cv HEK293, HRV treated, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081536
ID:
301081536
11.

mRNA-seq, RAD21cv HEK293, TEV treated, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081535
ID:
301081535
12.

mRNA-seq, RAD21cv HEK293, TEV treated, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081534
ID:
301081534
13.

Hi-C, HEK293 siRNA CTCF, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081533
ID:
301081533
14.

Hi-C, HEK293 siRNA CTCF, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081532
ID:
301081532
15.

Hi-C, HEK293 siRNA Control, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081531
ID:
301081531
16.

Hi-C, HEK293 siRNA Control, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081530
ID:
301081530
17.

Hi-C, RAD21cv HEK293, HRV treated, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081529
ID:
301081529
18.

Hi-C, RAD21cv HEK293, HRV treated, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081528
ID:
301081528
19.

Hi-C, RAD21cv HEK293, TEV treated, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081527
ID:
301081527
20.

Hi-C, RAD21cv HEK293, TEV treated, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081526
ID:
301081526
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Supplemental Content

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