GSE46848[Accession] - GEO DataSets - NCBI

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Select item 2000468481.

The distribution of genomic variations in human iPSCs is related to replication timing reorganization during reprogramming

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Genome variation profiling by SNP array; Genome variation profiling by genome tiling array

Platforms:: GPL6801 GPL570 GPL18318
17 Samples

Download data: CEL, CNCHP, PAIR

Series

Accession:: GSE46848

ID:: 200046848

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000005702.

[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 06, 2012: annotation table updated with netaffx build 32 June 23, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. more...

Organism:: Homo sapiens

602 DataSets
5671 Series
61 Related Platforms
175585 Samples

Platform

Accession:: GPL570

ID:: 100000570

Select item 1000183183.

NimbleGen Human 6x630K CGH Whole Genome tiling array [100710_HG19_WG_CGH_PERF_UX6]

(Submitter supplied) Build: HG19 Protocol: See www.nimblegen.com

Organism:: Homo sapiens

7 Series
44 Samples

Download data: GFF, NCD, NDF, POS

Platform

Accession:: GPL18318

ID:: 100018318

Select item 1000068014.

[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36) August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37) Protocol: see manufacturer's web site The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation. more...

Organism:: Homo sapiens

404 Series
22859 Samples

Platform

Accession:: GPL6801

ID:: 100006801

Select item 3011391385.

Organism:: Homo sapiens

Source name:: Human ESC replicate2

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139138

ID:: 301139138

Select item 3011391376.

Organism:: Homo sapiens

Source name:: Human ESC replicate1

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139137

ID:: 301139137

Select item 3011391347.

H2-1-p9-2 [genex]

Organism:: Homo sapiens

Source name:: hFib2 normal iPSC passage9 replicate2

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139134

ID:: 301139134

Select item 3011391338.

H2-1-p9-1 [genex]

Organism:: Homo sapiens

Source name:: hFib2 normal iPSC passage9 replicate1

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139133

ID:: 301139133

Select item 3011391249.

hFib2-2 [genex]

Organism:: Homo sapiens

Source name:: Human normal Fibroblast replicate2

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139124

ID:: 301139124

Select item 30113912310.

hFib2-1 [genex]

Organism:: Homo sapiens

Source name:: Human normal Fibroblast replicate1

Platform:: GPL570
Series:: GSE46848 GSE55395

Download data: CEL

Sample

Accession:: GSM1139123

ID:: 301139123

Select item 30114040611.

Organism:: Homo sapiens

Source name:: Episomal protein induced iPS cells derived from Normal Human BJ fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140406

ID:: 301140406

Select item 30114040512.

Organism:: Homo sapiens

Source name:: Episomal protein induced iPS cells derived from Normal Human BJ fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140405

ID:: 301140405

Select item 30114040413.

Organism:: Homo sapiens

Source name:: Episomal protein induced iPS cells derived from Normal Human BJ fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140404

ID:: 301140404

Select item 30114040314.

Organism:: Homo sapiens

Source name:: Episomal protein induced iPS cells derived from Normal Human BJ fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140403

ID:: 301140403

Select item 30114040215.

Organism:: Homo sapiens

Source name:: Normal Human BJ fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140402

ID:: 301140402

Select item 30114019216.

Organism:: Homo sapiens

Source name:: Virus induced iPS cells passage6 derived from Normal Human fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140192

ID:: 301140192

Select item 30114016517.

Organism:: Homo sapiens

Source name:: Virus induced iPS cells passage6 derived from Normal Human fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140165

ID:: 301140165

Select item 30114015218.

Organism:: Homo sapiens

Source name:: Human Normal Fibroblast

Platform:: GPL6801
Series:: GSE46848 GSE55395

Download data: CEL, CNCHP

Sample

Accession:: GSM1140152

ID:: 301140152

Select item 30133532219.

Replication timing of BJ fibroblast, average of 2 biological replicates [CNV]

Organism:: Homo sapiens

Source name:: Early-replicating DNA of BJ fibroblast cells (channel 1) Late replicating DNA of BJ fibroblast cells (channel 2)

Platform:: GPL18318
Series:: GSE46848 GSE55397

Download data: PAIR

Sample

Accession:: GSM1335322

ID:: 301335322

Select item 30133532120.

Replication timing of H2-1 iPSC, average of 2 biological replicates [CNV]

Organism:: Homo sapiens

Source name:: Early-replicating DNA of H2-1 iPSC cells (channel 1) Late replicating DNA of H2-1 iPSC cells (channel 2)

Platform:: GPL18318
Series:: GSE46848 GSE55397

Download data: PAIR

Sample

Accession:: GSM1335321

ID:: 301335321

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