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Items: 1 to 20 of 27

1.

Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation

(Submitter supplied) Artificial transcription factors (ATFs) and genomic nucleases based on a DNA binding platform consist- ing of multiple zinc finger domains are currently be- ing developed for clinical applications. However, no genome-wide investigations into their binding speci- ficity have been performed. We have created six- finger ATFs to target two different 18 nt regions of the human SOX2 promoter; each ATF is constructed such that it contains or lacks a super KRAB do- main (SKD) that interacts with a complex contain- ing repressive histone methyltransferases. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
25 Samples
Download data: BED, GFF, TXT
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

RNA-seq_598-SKD_3dDox_rep3

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462977
ID:
301462977
4.

RNA-seq_598-SKD_3dDox_rep2

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462976
ID:
301462976
5.

RNA-seq_598-SKD_3dDox_rep1

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462975
ID:
301462975
6.

RNA-seq_598-SKD_0dDox_rep3

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462974
ID:
301462974
7.

RNA-seq_598-SKD_0dDox_rep2

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462973
ID:
301462973
8.

RNA-seq_598-SKD_0dDox_rep1

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462972
ID:
301462972
9.

WGBS_598-SKD_0dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462971
ID:
301462971
10.

H3K9me3_ChIP_598-SKD_3dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462970
ID:
301462970
11.

H3K9ac_ChIP_598-SKD_3dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462969
ID:
301462969
12.

H3K4me3_ChIP_598-SKD_3dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462968
ID:
301462968
13.

H3K9me3_ChIP_598-SKD_0dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462967
ID:
301462967
14.

H3K9ac_ChIP_598-SKD_0dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462966
ID:
301462966
15.

H3K4me3_ChIP_598-SKD_0dDox

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462965
ID:
301462965
16.

HA_ChIP_598-SKD_rep3

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462964
ID:
301462964
17.

HA_ChIP_598-SKD_rep2

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462963
ID:
301462963
18.

HA_ChIP_598-SKD_rep1

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462962
ID:
301462962
19.

HA_ChIP_552-SKD_rep3

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462961
ID:
301462961
20.

HA_ChIP_552-SKD_rep2

Organism:
Homo sapiens
Source name:
Human breast adenocarcinoma cell-line MCF7
Platform:
GPL11154
Series:
GSE59980
Download data
Sample
Accession:
GSM1462960
ID:
301462960
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