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Items: 3

1.

Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions

(Submitter supplied) We show that N6-methyladenosine (m6A), the most abundant internal modification in mRNA/lncRNA with still poorly characterized function, alters RNA structure to facilitate the access of RBM for heterogeneous nuclear ribonucleoprotein C (hnRNP C). We term this mechanism m6A-switch. Through combining PAR-CLIP with Me-RIP, we identify 39,060 m6A-switches among hnRNP C binding sites transcriptome-wide. We show that m6A-methyltransferases METTL3 or METTL14 knockdown decreases hnRNP C binding at 16,582 m6A-switches. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other
Platform:
GPL11154
18 Samples
Download data: XLSX
Series
Accession:
GSE56010
ID:
200056010

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10512 Series
183216 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

hnRNPC-PAR-CLIP-METTL3KD-rep2

Organism:
Homo sapiens
Source name:
Embryonic kidney cells
Platform:
GPL11154
Series:
GSE56010
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Sample
Accession:
GSM1350199
ID:
301350199

SRA Run Selector

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db=gds|term=GSM1350199[Accession]|query=12|qty=2|blobid=MCID_66f6b28c8c49702d715cec6f|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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