GSM1537667[Accession] - GEO DataSets

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Items: 3

Select item 2000629901.

Next generation sequencing reveals the diversity and population-genetic properties of cattle CNVs

(Submitter supplied) Structural and functional impacts of copy number variations (CNVs) on livestock genomes are not yet well understood. In this study, we have identified 1853 CNV regions (CNVRs) using population-scale sequencing data generated from 75 cattle of 8 breeds (Holstein, Angus, Jersey, Limousin, Romagnola, Brahman, Gir and Nelore). Individual genome sequence coverage ranged from 4 to 30 fold, with a mean of 11.8 fold. more...

Organism:: Bos taurus

Type:: Genome variation profiling by genome tiling array

Platform:: GPL11314
25 Samples

Download data: BED, PAIR

Series

Accession:: GSE62990

ID:: 200062990

PubMed Full text in PMC Similar studies

Select item 1000113142.

NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH

(Submitter supplied) This array was designed based on Btau_UMD3.0. The Btau_UMD3.1 assembly is identical in almost all respects to UMD3.0. All chromosomes are unchanged. For additional information, see http://www.cbcb.umd.edu/research/bos_taurus_assembly.shtml . The supplementary file 'GPL11314_Btau_4.0.txt' contains the results of LIFTOVER (default setting) to convert the positions of probes from UMD3.0 to Btau_4.0. About 95% (~2,066,000) of the probes were converted successfully. more...