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Items: 3

1.

Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation

(Submitter supplied) The diversity of small RNA-directed DNA methylation (RdDM) mechanisms have been underestimated due to the nearly complete transcriptional silencing of transposable elements (TEs) in the wild-type reference strains of Arabidopsis thaliana. In plants mutant for the SWI/SNF histone remodeler DDM1, TEs are globally activated due to loss of genome wide heterochromatin condensation. Transcriptionally activated TEs go through additional non-canonical forms of RdDM that are dependent on RNA Polymerase II expression. more...
Organism:
Arabidopsis thaliana
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL19580
21 Samples
Download data: TSV, TXT
Series
Accession:
GSE79746
ID:
200079746
2.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
392 Series
9008 Samples
Download data
Platform
Accession:
GPL19580
ID:
100019580
3.

ddm1 ago6

Organism:
Arabidopsis thaliana
Source name:
stage 1-9 inflorescence tissue
Platform:
GPL19580
Series:
GSE79746
Download data: TSV
Sample
Accession:
GSM2101962
ID:
302101962
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Supplemental Content

db=gds|term=GSM2101962[Accession]|query=1|qty=2|blobid=MCID_66564aa86c05354989e0b67d|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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