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Items: 4

1.

microRNA-triggered transposon small RNAs mediate genome dosage response

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL19580 GPL17970 GPL17639
24 Samples
Download data: TXT, WIG
Series
Accession:
GSE106117
ID:
200106117
2.

microRNA-triggered transposon small RNAs mediate genome dosage response (mir845 sRNA-Seq)

(Submitter supplied) Chromosome dosage plays a significant role in reproductive isolation and speciation in both plants and animals, but underlying mechanisms are largely obscure. Transposable elements can promote hybridity through maternal small RNA, and have been postulated to regulate dosage response via neighboring imprinted genes. Here, we show that a highly conserved microRNA in plants, miR845, targets the tRNAMet primer-binding site (PBS) of LTR-retrotransposons in Arabidopsis pollen, and triggers the accumulation of 21 to 22-nucleotide small RNA in a dose dependent fashion via RNA polymerase IV. more...
Organism:
Arabidopsis thaliana
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL17639
4 Samples
Download data: TXT
Series
Accession:
GSE106115
ID:
200106115
3.

Illumina HiSeq 2500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
799 Series
14215 Samples
Download data
Platform
Accession:
GPL17639
ID:
100017639
4.

mir845 1n rep1

Organism:
Arabidopsis thaliana
Source name:
Pollen
Platform:
GPL17639
Series:
GSE106115 GSE106117
Download data: TXT
Sample
Accession:
GSM2829922
ID:
302829922
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Supplemental Content

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