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Items: 4

1.

Genome-wide profiling of nucleosomes (MNase-seq), total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIP-seq) in wild-type, fpa mutant and bdrs triple mutant

(Submitter supplied) We used an MNase digestion of chromatin from Arabidopsis seedlings, combined or not with ChIP (native ChIP), to analyze by high-throughput sequencing the genome-wide profiles of nucleosomes (MNase-seq), and of total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIPs) in wild-type (Col-0), fpa mutant (fpa/AT2G43410, line fpa-7) and a triple mutant of all three BDR proteins (bdrs: cross of bdr1/AT5G25520 mutant SALK_142108C, bdr2/AT5G11430 mutant CS852350 and bdr3/AT2G25640 mutant SALK_059905). more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL19580
15 Samples
Download data: BIGWIG, TXT
Series
Accession:
GSE113076
ID:
200113076
2.

RNA-seq, ChIP-seq and MNase-seq in WT, fpa mutant and bdr1,2,3 mutant Arabidopsis seedlings

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL13222 GPL19580
111 Samples
Download data: BED, BIGWIG
Series
Accession:
GSE112443
ID:
200112443
3.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
394 Series
9018 Samples
Download data
Platform
Accession:
GPL19580
ID:
100019580
4.

MNase_bdrs

Organism:
Arabidopsis thaliana
Source name:
seedlings, 7-day-old
Platform:
GPL19580
Series:
GSE112443 GSE113076
Download data: BIGWIG
Sample
Accession:
GSM3095875
ID:
303095875
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Supplemental Content

db=gds|term=GSM3095875[Accession]|query=1|qty=2|blobid=MCID_667962ad8c5d4760e2013050|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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