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Items: 3

1.

Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA

(Submitter supplied) We report polysomal RNA sequencing data (RNAseq), small RNAseq, and virus-like-particle (VLP) DNA sequencing (DNAseq) and ChIPseq data. Arabidopsis ddm1 mutants produce LTR retrotransposon transcripts that are processed into 21-22 nt easiRNAs by RNA-Dependent RNA polymerase 6 (RDR6). To test if 21-22 nt easiRNAs regulate transcription, translation and reverse transcription of LTR retrotransposons, we compared ddm1 and ddm1rdr6 in polysomal RNAseq, VLP DNAseq and ChIPseq data. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
48 Samples
Download data: BEDGRAPH, BW, TXT, VCF
Series
Accession:
GSE128932
ID:
200128932
2.

Illumina HiSeq 2000 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
772 Series
10970 Samples
Download data
Platform
Accession:
GPL13222
ID:
100013222
3.

Total RNA ddm1 Rep 1

Organism:
Arabidopsis thaliana
Source name:
Inflorescence tissues
Platform:
GPL13222
Series:
GSE128932
Download data: TXT
Sample
Accession:
GSM3688568
ID:
303688568
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