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Items: 4

1.

QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens; Mus musculus; Arabidopsis thaliana; synthetic construct
Type:
Other
4 related Platforms
12 Samples
Download data: TXT
Series
Accession:
GSE130837
ID:
200130837
2.

QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants III

(Submitter supplied) Non-coding genetic variants/mutations can play functional roles in the cell by disrupting regulatory interactions between transcription factors (TFs) and their genomic target sites. For most human TFs, a myriad of DNA-binding models are available and could be used to predict the effects of DNA mutations on TF binding. However, information on the quality of these models is scarce, making it hard to evaluate the statistical significance of predicted binding changes. more...
Organism:
Homo sapiens; synthetic construct
Type:
Other
Platform:
GPL26634
1 Sample
Download data: TXT
Series
Accession:
GSE130833
ID:
200130833
3.

Duke/RG_uPBM_4x44k_with_GR_probes

(Submitter supplied) In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing DNA binding site for human GR protein
Organism:
synthetic construct
2 Series
1 Sample
Download data
Platform
Accession:
GPL26634
ID:
100026634
4.

NR3C1 at 800 nM concentration

Organism:
Homo sapiens
Source name:
Human NR3C (also known as GR) (DBD)
Platform:
GPL26634
Series:
GSE130833 GSE130837
Download data: TXT
Sample
Accession:
GSM3754997
ID:
303754997
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