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Items: 4

1.

Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Salmonella enterica; Escherichia coli BW25113; Escherichia coli K-12
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing
5 related Platforms
39 Samples
Download data: TDF, TXT
Series
Accession:
GSE135949
ID:
200135949
2.

Mapping PT modifications in bacteria

(Submitter supplied) One microbial organism always contains multiple DNA modification systems as defense strategies or epigenetic controls. Here, we describe crosstalk between two distinct DNA modifications with different target sequence motif: DNA phosphorothioation (PT, GPSAAC/GPSTTC by DndACDE proteins) and N6-methyl-adenine methylation (m6A, G6mATC by Dam protein). By using a newly developed DNA modification sequencing method PT nick-seq, we found that half of PT modifications change from GAAC/GTTC to GATC sites after bacteria have lost Dam.
Organism:
Salmonella enterica; Escherichia coli K-12
Type:
Other
Platforms:
GPL27120 GPL27121
12 Samples
Download data: TXT
Series
Accession:
GSE135910
ID:
200135910
3.

HiSeq X Ten (Escherichia coli K-12)

Organism:
Escherichia coli K-12
2 Series
8 Samples
Download data
Platform
Accession:
GPL27120
ID:
100027120
4.

E.coli JW3350[pJTU1980]-iodine

Organism:
Escherichia coli K-12
Source name:
E.coli k12 JW3350
Platform:
GPL27120
Series:
GSE135910 GSE135949
Download data: TXT
Sample
Accession:
GSM4037778
ID:
304037778
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