GSM4107812[Accession] - GEO DataSets

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Items: 4

Select item 2001384251.

Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24106
20 Samples

Download data: TXT

Series

Accession:: GSE138425

ID:: 200138425

PubMed Full text in PMC Similar studies

Select item 2001384222.

Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVTA_A2017]

(Submitter supplied) To explore in depth and in a quantitative manner the complexity of the HIV-1 splicing landscape we used nanopore long-read cDNA (ONT) sequencing in NL4-3 HIV-1 infected primary CD4+ T cells and transfected/infected HeLa cells. Mean read lengths were between 1286 and 2626 nucleotides with maximum sizes of up to 9182 nucleotides, sufficiently long to span all possible splice junctions and to be assigned to a total of 229 exon combinations. more...