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Items: 3

1.

Identification of m6A residues at single nucleotide resolution using eCLIP and an accessible custom analysis pipeline

(Submitter supplied) We have developed a modified eCLIP-based method (meCLIP) to identify m6A residues at single-nucleotide resolution. By coupling the improvements of eCLIP with an easy-to-use computational pipeline, we have successfully identified over 50,000 unique m6A residues in the two breast cancer cell lines that were analyzed (MCF-7 and MDA-MB-231) and over 8,000 unique residues in HEK-293 cells. We compared these residues to the sites called using the currently most utilized m6A identification method (miCLIP).
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24676
17 Samples
Download data: BAI, BAM, BED, XLS
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

meCLIP_HEK293_rep3_IP

Organism:
Homo sapiens
Source name:
embryonic kidney cells
Platform:
GPL24676
Series:
GSE147440
Download data: BAI, BAM, BED, XLS
Sample
Accession:
GSM4970405
ID:
304970405
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