U.S. flag

An official website of the United States government

Format
Sort by

Send to:

Choose Destination

Search results

Items: 4

1.

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Solanum lycopersicum
Type:
Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platform:
GPL29032
824 Samples
Download data: BED, BW
Series
Accession:
GSE173213
ID:
200173213
2.

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [pre-experiment]

(Submitter supplied) The biggest advantage of DAP-seq is that it’s capable of measuring the influence of DNA methylation on TF binding, without disturbing of other epigenetic markers. Here, by utilizing DNA affinity purification sequencing, we generated two binding sets which were incubated with DNA libraries that representing methylomes in different developmental stage. And we made the most of our data to predict DNA methylation impact on TF binding in two dimensions: prediction by comparing genome-wide binding signal in motif-matched regions with or without methylation in single stage, and prediction by comparing binding signal variation in motif-matched regions with or without methylation variation.
Organism:
Solanum lycopersicum
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL29032
24 Samples
Download data: BED, BW
Series
Accession:
GSE171493
ID:
200171493
3.

NextSeq 550 (Solanum lycopersicum)

Organism:
Solanum lycopersicum
10 Series
913 Samples
Download data
Platform
Accession:
GPL29032
ID:
100029032
4.

HALO-Green-ampDAP [300_A]

Organism:
Solanum lycopersicum
Source name:
AC fruit
Platform:
GPL29032
Series:
GSE171493 GSE173213
Download data: BW
Sample
Accession:
GSM5226329
ID:
305226329
Format
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=GSM5226329[Accession]|query=1|qty=2|blobid=MCID_670dff33c7d3ca20d5d9a268|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center