GSM537089[Accession] - GEO DataSets

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Items: 3

Select item 2000214921.

Experimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample

(Submitter supplied) HiSpOD is a new efficient functional microarrays probe design algorithm especially dedicated for the microbial ecology and environmental studies. It was used to design 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways and synthesized on a nimblegen microarray. In order to test the probe specificity, the microarray was firstly hybridized to 6 µg of labelled aRNA from sheep rumen content (background aRNA). more...

Organism:: uncultured organism; synthetic construct

Type:: Expression profiling by array

Platform:: GPL10353
3 Samples

Download data: PAIR

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Accession:: GSE21492

ID:: 200021492

Select item 1000103532.

Nimblegen_Custom_Chloroethene_array_V01

(Submitter supplied) The Platform data table reflects a condensed representation of the expression array's replicates (SEQ_ID) features. The design includes 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.