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Items: 4

1.

Mapping of H3K4 and H3K27 trimethylation in zebrafish cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Danio rerio
Type:
Expression profiling by array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10835 GPL10816
7 Samples
Download data: GPR, PAIR
Series
Accession:
GSE23872
ID:
200023872
2.

Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip)

(Submitter supplied) The genomic distribution of post-translationally modified histones in the zebrafish (Danio rerio) genome remain largely unraveled. The objective of this study was to (1) design a microarray covering all zebrafish gene promoters and 5' end of coding regions, and (ii) using these arrrays, map the genome-wide distribution of trimethylated H3K4 and H3K27 in the mbryo derived ZF4 cell line. Specifically, we determined teh enrichment profile of H3K4me3, H3K27me3 and of both (co-enriched) modifications in ZF4 cells. more...
Organism:
Danio rerio
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10835
4 Samples
Download data: PAIR
Series
Accession:
GSE23691
ID:
200023691
3.

090313_Zv7_PC_ChIP_HX1

(Submitter supplied) Sanger Zv7 assembly Tiling of TSS (15kb upstream, 5kb downstream) native array description file: 090313_Zv7_PC_ChIP_HX1.ndf native array description file: 090313_Zv7_PC_ChIP_HX1.pos Protocol: See manufacturer's web site (www.nimblegen.com)
Organism:
Danio rerio
5 Series
47 Samples
Download data: NDF, POS
Platform
Accession:
GPL10835
ID:
100010835
4.

ZF4_H3K27me3_Repl2

Organism:
Danio rerio
Source name:
H3K27me3 ChIP DNA (channel 1) Input DNA from ZF4 cells (channel 2)
Platform:
GPL10835
Series:
GSE23691 GSE23872
Download data: PAIR
Sample
Accession:
GSM581036
ID:
300581036
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