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Items: 3

1.

Cell type specific transcriptome profiling reveals a role for thioredoxin in neutrophils and tumor initiation

(Submitter supplied) We report the application of Translating Ribosomal Affinity Purification (TRAP) seq for identifying cell type specific gene expression in the zebrafish larvae. Using cell specific promoters to drive an EGFP-tagged ribosomal subunit, we were able to identify translating mRNA transcripts in keratinocytes (krt4), neutrophils (lyz) and macrophages (mpeg) during early cancer transformation. In our zebrafish model of HRasG12V -transformed keratinocytes, we identified 56 differentially expressed genes in keratinocytes, 53 genes in neutrophils, and no differentially expressed genes found in macrophages, compared to control. more...
Organism:
Danio rerio
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14875
18 Samples
Download data: RESULTS, XLSX
Series
Accession:
GSE193591
ID:
200193591

PubMed Full text in PMC Similar studies

2.

Illumina HiSeq 2000 (Danio rerio)

Organism:
Danio rerio
295 Series
4648 Samples
Download data
Platform
Accession:
GPL14875
ID:
100014875

3.

Krt V12_rep1

Organism:
Danio rerio
Source name:
epithelial
Platform:
GPL14875
Series:
GSE193591
Download data: RESULTS
Sample
Accession:
GSM5814805
ID:
305814805

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db=gds|term=GSM5814805[Accession]|query=1|qty=2|blobid=MCID_6703cb9ad3e79154ac81906b|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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