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Items: 4

1.

Paired single-cell host profiling with multiplex-tagged bacterial mutants reveals intracellular virulence-immune networks

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
synthetic construct; Mus musculus
Type:
Expression profiling by high throughput sequencing; Other
4 related Platforms
136 Samples
Download data: TXT
Series
Accession:
GSE198728
ID:
200198728
2.

Paired single-cell host profiling with multiplex-tagged bacterial mutants reveals intracellular virulence-immune networks IV

(Submitter supplied) Encounters between host cells and intracellular bacterial pathogens lead to complex phenotypes that determine the outcome of infection. Single-cell RNA-sequencing (scRNA-seq) are increasingly used to study the host factors underlying diverse cellular phenotypes. But current approaches do not permit the simultaneous unbiased study of both host and bacterial factors during infection. Here, we developed scPAIR-seq, an approach to analyze both host and pathogen factors during infection by combining multiplex-tagged mutant bacterial library with scRNA-seq to identify mutant-specific changes in host transcriptomes. more...
Organism:
synthetic construct
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26967
38 Samples
Download data: TXT
Series
Accession:
GSE198724
ID:
200198724
3.

Illumina MiniSeq (synthetic construct)

Organism:
synthetic construct
11 Series
84 Samples
Download data
Platform
Accession:
GPL26967
ID:
100026967
4.

inf_BMDMs 14 scRNA-seq

Organism:
synthetic construct
Source name:
infected BMDMs
Platform:
GPL26967
Series:
GSE198724 GSE198728
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Sample
Accession:
GSM5955801
ID:
305955801
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db=gds|term=GSM5955801[Accession]|query=1|qty=3|blobid=MCID_67b12fa55b08ab4a170f4c28|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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