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Items: 3

1.

Dissociation Protocols used for Sarcoma Tissues Bias the Transcriptome observed in Single-cell and Single-nucleus RNA sequencing.

(Submitter supplied) To determine whether sarcomas – tumors of mesenchymal origin – are subject to the same technical artifacts, we profiled patient-derived tumor explants (PDXs) propagated from three aggressive subtypes: osteosarcoma, Ewing sarcoma (ES), desmoplastic small round cell tumor (DSRCT). Given the rarity of these sarcoma subtypes, we explored whether single-nuclei RNA-seq from more widely available archival frozen specimens could accurately be identified by gene expression signatures linked to tissue phenotype or pathognomonic fusion proteins.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24676
26 Samples
Download data: CSV, H5
Series
Accession:
GSE200529
ID:
200200529
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

DSRCT-2 Nuclei Isolation

Organism:
Homo sapiens
Source name:
PDX
Platform:
GPL24676
Series:
GSE200529
Download data: CSV, H5
Sample
Accession:
GSM6035496
ID:
306035496
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