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Items: 4

1.

Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Type:
Other; Expression profiling by high throughput sequencing
Platforms:
GPL17070 GPL21220
132 Samples
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Series
Accession:
GSE234010
ID:
200234010
2.

Improved RNA stability estimation through Bayesian modeling reveals most bacterial transcripts have sub-minute half-lives [CLIP-seq]

(Submitter supplied) RNA decay is a crucial mechanism for regulating gene expression in response to environmental stresses. In bacteria, RNA-binding proteins (RBPs) are known to be involved in post-transcriptional regulation, but their global impact on RNA half-lives has not been extensively studied. To shed light on the role of the major RBPs ProQ and CspC/E in maintaining RNA stability, we performed RNA sequencing of Salmonella enterica over a time course following treatment with the transcription initiation inhibitor rifampicin (RIF-seq) in the presence and absence of these RBPs. more...
Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Type:
Other
Platform:
GPL21220
12 Samples
Download data: CSV, GFF
Series
Accession:
GSE234007
ID:
200234007
3.

Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
13 Series
125 Samples
Download data
Platform
Accession:
GPL21220
ID:
100021220
4.

CspE CLIP-seq, UV-crosslinked, biol rep 2 (Sample 9)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
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Sample
Accession:
GSM7440463
ID:
307440463
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