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Items: 3

1.

Nucleosomal and subnucleosomal organization of transcription cis-regulatory elements in mouse embryonic stem cells (chip-seq gradient)

(Submitter supplied) We report an in-depth analysis of nucleosomal and subnucleosomal organization at cis-regulatory elements (CREs) in mouse embryonic stem (ES) cells. We used chromatin fragmented by a moderate dose of micrococcal nuclease (MNase) as input for ChIP-seq with antibodies against histones and transcription factors, and high-coverage deep-sequencing. Centrifugation of chromatin through sucrose gradients, followed by ChIP-seq, allowed the characterization of different subclasses of subnucleosomal particles having distribution patterns specific to enhancers, gene promoters and CTCF binding sites. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9185
42 Samples
Download data: BW
Series
Accession:
GSE255089
ID:
200255089
2.

Illumina Genome Analyzer (Mus musculus)

Platform
Accession:
GPL9185
ID:
100009185
3.

Histone H3 MNase ChIP-seq low sedimentation rate (5-6) - Brd9-depleted auxin 20h replicate 2

Organism:
Mus musculus
Source name:
Brd9-3FTH-AID
Platform:
GPL9185
Series:
GSE255089
Download data: BW
Sample
Accession:
GSM8063841
ID:
308063841
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