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Items: 3

1.

Perspectives on Codebook: sequence specificity of uncharacterized human transcription factors

(Submitter supplied) We describe an effort (“Codebook”) to determine the sequence specificity of 332 putative and largely uncharacterized human transcription factors (TFs), as well as 61 control TFs. Nearly 5,000 independent experiments, including in vitro and in vivo assays, produced motifs for most of the uncharacterized TFs analyzed (180, or 53%), the vast majority of which are unique to a single TF. The data highlight the extensive contribution of transposable elements to TF evolution, both in cis and trans, and identify tens of thousands of conserved, base-level binding sites in the human genome. more...
Organism:
Homo sapiens; synthetic construct
Type:
Other
Platform:
GPL11260
462 Samples
Download data: TXT
Series
Accession:
GSE275577
ID:
200275577
2.

Agilent custom ME and HK design array [8mer]

(Submitter supplied) 8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences. Protocol: This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.
Organism:
synthetic construct
29 Series
1 Related Platform
4703 Samples
Download data: TXT
Platform
Accession:
GPL11260
ID:
100011260
3.

DNTTIP1.PBM13562.ME

Organism:
Homo sapiens
Source name:
DNTTIP1.PBM13562.ME PBM, ME design
Platform:
GPL11260
Series:
GSE275577
Download data: TXT
Sample
Accession:
GSM8479876
ID:
308479876
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db=gds|term=GSM8479876[Accession]|query=1|qty=3|blobid=MCID_67a8499e85cceb19951d0f5c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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