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Items: 4

1.

A role for the nucleoporin Nup170p in chromatin structure and gene silencing

(Submitter supplied) Embedded in the nuclear envelope, nuclear pore complexes (NPCs) not only regulate nuclear transport, but also interface with both transcriptionally active euchromatin and largely silenced heterochromatin, as well as the boundaries between these regions. It is unclear what functional role NPCs play in establishing or maintaining these distinct chromatin domains. Here we report that the yeast NPC protein Nup170p interacts with specific regions of the genome containing ribosomal protein and subtelomeric genes. more...
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing; Genome binding/occupancy profiling by array; Expression profiling by array
Platforms:
GPL6068 GPL9377 GPL4131
14 Samples
Download data: GFF, TSV, TXT
Series
Accession:
GSE36795
ID:
200036795
2.

A role for the nucleoporin Nup170p in chromatin structure and gene silencing [Agilent ChIP-chip]

(Submitter supplied) Embedded in the nuclear envelope, nuclear pore complexes (NPCs) not only regulate nuclear transport, but also interface with both transcriptionally active euchromatin and largely silenced heterochromatin, as well as the boundaries between these regions. It is unclear what functional role NPCs play in establishing or maintaining these distinct chromatin domains. Here we report that the yeast NPC protein Nup170p interacts with specific regions of the genome containing ribosomal protein and subtelomeric genes. more...
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by array
Platform:
GPL4131
4 Samples
Download data: TSV
Series
Accession:
GSE36794
ID:
200036794
3.

Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A)

(Submitter supplied) Yeast ChIP-on-Chip Set 4x44K Arrays of this design have barcodes that begin with 16014810 or 2514810. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...
Organism:
Saccharomyces cerevisiae
56 Series
1 Related Platform
802 Samples
Download data
Platform
Accession:
GPL4131
ID:
100004131
4.

Nup170-myc ChIP from yku70∆ cells

Organism:
Saccharomyces cerevisiae
Source name:
Nup170-myc ChIP from yku70∆ cells, ChIP (channel 1) Whole cell extractof Nup170-9xMyc in yku70∆ cells (channel 2)
Platform:
GPL4131
Series:
GSE36794 GSE36795
Download data: TSV
Sample
Accession:
GSM901174
ID:
300901174
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db=gds|term=GSM901174[Accession]|query=1|qty=2|blobid=MCID_66748e6e8c5d4760e2a95b3d|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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