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1.

RNA sequencing of bacterial samples

(Submitter supplied) This study aimed to investigate the survival of an environmental isolate under salt stress and to identify the various genes involved in stress protection following RNA sequencing analysis. The obtained results provide new targets that will allow understanding the in-depth mechanisms involved in the adaptation of bacteria to salt stress.
Organism:
Priestia megaterium
Type:
Expression profiling by high throughput sequencing
Platform:
GPL34380
4 Samples
Download data: TXT
Series
Accession:
GSE263823
ID:
200263823
2.

Active DNA demethylation regulates myo-inositol-mediated mutualism between plants and beneficial rhizobacteria

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Priestia megaterium; Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL17639 GPL27984
22 Samples
Download data: BW
Series
Accession:
GSE143436
ID:
200143436
3.

Active DNA demethylation regulates myo-inositol-mediated mutualism between plants and beneficial rhizobacteria [bacteria RNA-seq]

(Submitter supplied) Plants develop mutualistic association with beneficial rhizobacteria. To understand this important phenomenon, early mechanisms for establishing the mutualism are critical. Here we report that active DNA demethylation in plants controls root secretion of myo-inositol, which triggers and further facilitates colonization of the beneficial rhizobacteria Bacillus megaterium strain YC4, thereby allowing for plant growth-promotion. more...
Organism:
Priestia megaterium
Type:
Expression profiling by high throughput sequencing
Platform:
GPL27984
6 Samples
Download data
Series
Accession:
GSE143434
ID:
200143434
4.

Levels and Characteristics of mRNAs in Dormant Spores of Firmicute Species

(Submitter supplied) Spores of Bacillales and Clostridiales species contain 100s of different mRNAs, and their major function in Bacillus subtilis is to provide ribonucleotides for new RNA synthesis when spores germinate. In new work, RNA was isolated from spores of five Bacillales and one Clostridioides species and relative spore mRNA levels were determined by RNA-seq. Determination of RNA levels in single spores allowed calculation of RNA nt/spore, and assuming mRNA is 3% of spore RNA allowed calculation that only ~6% of spore mRNAs were present at ≥ 1/spore. more...
Organism:
Bacillus thuringiensis str. Al Hakam; Clostridioides difficile 630; Priestia megaterium QM B1551; Bacillus subtilis; Bacillus atrophaeus ATCC 9372; Geobacillus stearothermophilus ATCC 12980
Type:
Expression profiling by high throughput sequencing
6 related Platforms
12 Samples
Download data: TXT
Series
Accession:
GSE173854
ID:
200173854
5.

Metabolic rearrangements causing elevated proline and polyhydroxybutyrate accumulation during the osmotic adaptation response of Bacillus megaterium

(Submitter supplied) First transcriptome analyses of Bacillus megaterium DSM319 grown under mild and severe salt stress (up to 1.8 M NaCl) to analyse the addaptation of the organism on transcriptome level
Organism:
Priestia megaterium DSM 319
Type:
Expression profiling by array
Platform:
GPL24595
12 Samples
Download data: CSV, TXT
Series
Accession:
GSE110712
ID:
200110712
6.

Ketogulonigenium vulgare cells: co-culture mode vs. mono-culture mode

(Submitter supplied) Transcriptional profiling of K. vulgare cells co-cultured with Bacillus megaterium compared to K. vulgare mono-cultured cells. Differentially expressed genes in co-cultured and mono-cultured K. vulgare cells were analyzed. The aim was to investigate the mechanisms of B. megaterium stimulating K. vulgare propagation on global gene expression.
Organism:
Ketogulonicigenium vulgare WSH-001; Priestia megaterium
Type:
Expression profiling by array
Platform:
GPL14693
6 Samples
Download data: TXT
Series
Accession:
GSE37594
ID:
200037594
7.

Transcriptome profiling of degU expression reveals unexpected regulatory patterns in Bacillus megaterium and discloses new targets for optimizing expression

(Submitter supplied) First whole transcriptome assessment of a Bacillus megaterium strain. The B. megaterium DegU regulon was assessed for LB batch cultures with artificially induced degU expression. DegU is a pleiotropic regulator in B. subtilis governing adaptive responses such as secretory enzyme production.
Organism:
Priestia megaterium DSM 319; Priestia megaterium
Type:
Expression profiling by array
Platform:
GPL13998
8 Samples
Download data: CSV, HTML, TXT
Series
Accession:
GSE31083
ID:
200031083
8.

Illumina HiSeq 4000 (Priestia megaterium)

Organism:
Priestia megaterium
1 Series
4 Samples
Download data
Platform
Accession:
GPL34380
ID:
100034380
9.

Illumina NextSeq 500 (Bacillus megaterium QM B1551)

Organism:
Priestia megaterium QM B1551
1 Series
2 Samples
Download data
Platform
Accession:
GPL30080
ID:
100030080
10.

Illumina HiSeq 2500 (Bacillus megaterium)

Organism:
Priestia megaterium
2 Series
6 Samples
Download data
Platform
Accession:
GPL27984
ID:
100027984
11.

Agilent-028409 Bacillus megaterium Bm3_100512 (Probe name version)

(Submitter supplied) Bm Orf based + model proteins (NCBI genome) Arrays of this design have barcodes that begin with 16028409 or 2528409. Protocol: See manufacturer's web site at http://www.agilent.com/
Organism:
Priestia megaterium DSM 319
1 Series
1 Related Platform
12 Samples
Download data
Platform
Accession:
GPL24595
ID:
100024595
12.

Agilent-028409 Bacillus megaterium Bm3_100512 (Feature Number version)

(Submitter supplied) Bm Orf based + model proteins (NCBI genome) Arrays of this design have barcodes that begin with 16028409 or 2528409. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...
Organism:
Priestia megaterium DSM 319
1 Series
1 Related Platform
8 Samples
Download data: TXT
Platform
Accession:
GPL13998
ID:
100013998
13.

RNA sequencing of Priestia megaterium CL-1 at 8% salt stress ( 2)

Organism:
Priestia megaterium
Source name:
bacteria
Platform:
GPL34380
Series:
GSE263823
Download data
Sample
Accession:
GSM8199702
ID:
308199702
14.

RNA sequencing of Priestia megaterium CL-1 at 8% salt stress ( 1)

Organism:
Priestia megaterium
Source name:
bacteria
Platform:
GPL34380
Series:
GSE263823
Download data
Sample
Accession:
GSM8199701
ID:
308199701
15.

RNA sequencing of Priestia megaterium CL-1 without salt stress ( 2)

Organism:
Priestia megaterium
Source name:
bacteria
Platform:
GPL34380
Series:
GSE263823
Download data
Sample
Accession:
GSM8199700
ID:
308199700
16.

RNA sequencing of Priestia megaterium CL-1 without salt stress ( 1)

Organism:
Priestia megaterium
Source name:
bacteria
Platform:
GPL34380
Series:
GSE263823
Download data
Sample
Accession:
GSM8199699
ID:
308199699
17.

6H_T3_mRNA_seq

Organism:
Priestia megaterium
Source name:
6-hours-growth bacteria in LB
Platform:
GPL27984
Series:
GSE143434 GSE143436
Download data
Sample
Accession:
GSM4259467
ID:
304259467
18.

6H_T2_mRNA_seq

Organism:
Priestia megaterium
Source name:
6-hours-growth bacteria in LB
Platform:
GPL27984
Series:
GSE143434 GSE143436
Download data
Sample
Accession:
GSM4259466
ID:
304259466
19.

6H_T1_mRNA_seq

Organism:
Priestia megaterium
Source name:
6-hours-growth bacteria in LB
Platform:
GPL27984
Series:
GSE143434 GSE143436
Download data
Sample
Accession:
GSM4259465
ID:
304259465
20.

6H_C3_mRNA_seq

Organism:
Priestia megaterium
Source name:
6-hours-growth bacteria in LB
Platform:
GPL27984
Series:
GSE143434 GSE143436
Download data
Sample
Accession:
GSM4259464
ID:
304259464
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