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Items: 1 to 20 of 198

1.

Evidence of small interfering RNA in the fungus Fusarium fujikuroi

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL34083 GPL24816 GPL22633
14 Samples
Download data
Series
Accession:
GSE253166
ID:
200253166
2.

Evidence of small interfering RNA in the fungus Fusarium fujikuroi (miRNA-Seq)

(Submitter supplied) RNA interference (RNAi) mechanisms play key regulatory roles in many biological systems, and components of the RNAi pathway are conserved in a wide range of eukaryotic genomes, including those of filamentous fungi. The biotechnological fungus Fusarium fujikuroi, widely used in secondary metabolism studies, contains the complete set of genes expected for RNAi pathways, including dcl1 and dcl2 dicer genes. more...
Organism:
Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL22633 GPL34083
8 Samples
Download data: CSV
Series
Accession:
GSE253160
ID:
200253160
3.

A pair of effectors in a conditionally dispensable chromosome of Fusarium oxysporum suppresses host-specific immunity

(Submitter supplied) In plant pathogenic fungi, conditionally dispensable (CD) chromosomes are often associated with virulence, but not viability. Such virulence-associated CD chromosomes carry genes encoding effectors and/or host-specific toxin biosynthesis enzymes, potentially important for determining host specificity. Fusarium oxysporum causes devastating diseases of more than 100 plant species. In particular, F. oxysporum f. more...
Organism:
Brassica oleracea; Fusarium oxysporum; Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL19580 GPL29143 GPL29144
25 Samples
Download data: TXT
Series
Accession:
GSE157823
ID:
200157823
4.

A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual-transcriptomics

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17639 GPL26208 GPL24159
58 Samples
Download data: TXT
Series
Accession:
GSE168919
ID:
200168919
5.

mRNA-profiles of Arabidopsis thaliana (Col-0) roots infected with Fusarium oxysporum 5176 over a time course of six days

(Submitter supplied) Background: Cell walls (CWs) are protein-rich polysaccharide matrices essential for plant growth and environmental acclimationadaptation. The CW constitutes the first physical barrier as well as a primary source of sugars for plant microbes, such as the  vascular pathogen Fusarium oxysporum (Fo). Fo colonizes roots, advancing through the plant primary CWs towards the vasculature, where it grows causing devastation in many crops. more...
Organism:
Fusarium oxysporum; Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24159 GPL17639
52 Samples
Download data: TXT, XLSX
Series
Accession:
GSE168015
ID:
200168015
6.

Transcriptomic profilling of Arabidopsis thaliana roots infected by Fusarium oxysporum

(Submitter supplied) Using next-generation sequencing, we sequenced transcriptomes of A. thaliana plants infected by the pathogenic and the symbiotic fungus and analyzed plant and fungal gene expression changes between pathogenic and symbiotic interactions. Infected plants were sampled at early infection stages, 12, 24, 48 and 96 HPI (hours post inoculation)
Organism:
Arabidopsis thaliana; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL13222 GPL22481
29 Samples
Download data: TXT
Series
Accession:
GSE87352
ID:
200087352
7.

Transcriptome analysis of calcineurin-mediated genes in Fusarium oxysporum f. sp. lycopersici 4287

(Submitter supplied) To further understand the abnormal phenotype of the calcineurin mutant strains and identify calcineurin-mediated genes in F. oxysporum f. sp. lycopersici, we performed RNA sequencing to compare the transcriptome profiles of the wild-type (WT), Δcna1(HFW1) and Δcnb1 (HFW3) mutants. By pairwise analysis, a total of 2139 genes were differentially expressed between WT and Δcna1 mutant based on the selection criteria of four-fold change in expression (Log2 fold change > 2 or < -2, P < 0.05). more...
Organism:
Fusarium oxysporum f. sp. lycopersici 4287
Type:
Expression profiling by high throughput sequencing
Platform:
GPL27462
3 Samples
Download data: TXT
Series
Accession:
GSE137468
ID:
200137468
8.

Comparative transcriptomic analysis of races 1, 2 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles

(Submitter supplied) Background: The fungal pathogen, Fusarium oxysporum f.sp. pisi (Fop) causes fusarium wilt in peas. Races 1, 2, 5 and 6 are responsible for the majority of the economic losses globally. These are the only races present in Australia. Molecular infection mechanisms have been studied in a few other F. oxysporum formae speciales however, there has been no Fop-pea pathosystem studies. Results: A transcriptomic study was carried out to understand the molecular pathogenicity differences between the races. more...
Organism:
Fusarium oxysporum f. sp. pisi
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29262
48 Samples
Download data: TXT
Series
Accession:
GSE159726
ID:
200159726
9.

RNA-seq data of nox1 gene when T. guizhouense vs F. oxysporum

(Submitter supplied) nox1 gene has effect on the production of H2O2 of T. guizhouense NJAU4742. In this experiment, WT, knockout mutant and overexpression mutant of nox1 gene for NJAU4742 were used to do confrantation with F. oxysporum FOC4 strain, and then the mycelum from NJAU4742 and FOC4 (before contact and after contact) were collected and used to detect the gene expression patterns in this progress by RNA-seq.
Organism:
Trichoderma guizhouense; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL25398 GPL22481 GPL25399
27 Samples
Download data: XLSX
Series
Accession:
GSE117839
ID:
200117839
10.

Comparsion of histone modifications of core and accessory chromosomes of Fusarium oxysporum

(Submitter supplied) To study whether there are differences in chromatin-mediated regulation between and within chromosomes in Fusarium oxysporum f. sp. lycopersici 4287 (FGSC9935), we determined the distribution of histone marks associated with euchromatin (H3K4me2) and facultative heterochromatin (H3K27me3) in vitro. We then determined whether these differences correlate with differences in dispensability and sequence divergence and gene expression.
Organism:
Fusarium oxysporum
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL24159
4 Samples
Download data: BED
Series
Accession:
GSE121283
ID:
200121283
11.

RNAseq analysis of the effects of light and the carS mutation in Fusarium fujikuroi and Fusarium oxysporum

(Submitter supplied) In the fungi Fusarium fujikuroi and Fusarium oxysporum, the induction of carotenogenesis by light and its deregulation in carS mutants, affected in a protein of the RING-finger family, are achieved on transcription of the structural genes of the pathway, some of them organized in a cluster. We have carried out global RNAseq transcriptomics analyses to investigate the relationship between the regulatory effects of light and the carS mutation. more...
Organism:
Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24303 GPL24306
20 Samples
Download data: TSV
Series
Accession:
GSE107342
ID:
200107342
12.

Response by Fusarium oxysporum f.sp. lycopersici 4287 to 28 and 37 degrees celcius

(Submitter supplied) Temperature shift experiment to assay heat stress response
Organism:
Fusarium oxysporum f. sp. lycopersici 4287
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24908
6 Samples
Download data: TXT
Series
Accession:
GSE113332
ID:
200113332
13.

Transcriptome analysis reveal the mechanism of Fungicidal of Thymol against Fusarium oxysporum f.sp. niveum

(Submitter supplied) Thymol (5-methyl-2-(1-methylethyl) phenol, PubChem CID: 6989) has been extensively reported to have antimicrobial activity against pathogenic microorganisms. In this study, the growth of F. oxysporum was significantly inhibited by thymol in vitro. The dry weight of F. oxysporum was decreased significantly. Thymol-induced cell membrane damage was observed at 24 hpi (hours post incubation). Therefore, the changes in the gene expression level of F. more...
Organism:
Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24159
6 Samples
Download data: TXT
Series
Accession:
GSE105423
ID:
200105423
14.

Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes

(Submitter supplied) We provide genome sequences of altogether 9 F. fujikuroi and one F. oxysporum (outgroup) strains, all isolated from rice plants in different geographical regions of the world, and searched for differences in genome structure, chromosome size, secondary metabolite production, virulence on rice, and in vitro and in planta transcriptome profiles. Despite their high relatedness on genome level, they differ significantly in their ability to infect rice, to form asexual spores (micro-and macroconidia), and to produce secondary metabolites. more...
Organism:
Fusarium oxysporum; Fusarium fujikuroi
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22481 GPL22633
30 Samples
Download data: TXT
Series
Accession:
GSE89480
ID:
200089480
15.

microRNA-like RNAs exploring and expression profile in plant pathogenic fungus Fusarium oxysporum f. sp. niveum

(Submitter supplied) To explore the presence of milRNA in Fusarium oxysporum f. sp. niveum (Fon) and evaluate their expression at different propagules, two categories of sRNAs were identified from Fon hyphae and microconidia by using illumina sequencing. A total of 650,960 and 561,114 unique sRNAs were obtained from the hyphae and microconidia samples. With a previously constructed pipeline to search for microRNA, we then identified 74 and 56 miRNA-like small RNAs (milRNAs) candidates in hyphae and microconidia based on the short hairpin structure analysis, respectively. more...
Organism:
Fusarium oxysporum f. sp. niveum
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL22156
2 Samples
Download data: FA, TXT
Series
Accession:
GSE84384
ID:
200084384
16.

New insights into antifungal resistance mechanisms in Fusarium species revealed by high throughput sequencing

(Submitter supplied) Fusarium spp. are fungal pathogens of humans and plants. Fusarium oxysporum and Fusarium solani are important species isolated from infections such as onychomycosis, fungal keratitis, invasive infections, and disseminated diseases. These pathologies have a very difficult therapeutic management and poor therapeutic responses, especially in patients with disseminated infection. Little information is available regarding the molecular mechanisms responsible for antifungal resistance in these fungi. more...
Organism:
Fusarium solani; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL21965 GPL21966
6 Samples
Download data: TSV
Series
Accession:
GSE82060
ID:
200082060
17.

Genome Sequencing and Comparative Transcriptomics of Race1 and Race4 of Banana pathogen: Fusarium oxysporum f.sp. Cubense

(Submitter supplied) Deep sequencing of mRNA from Fusarium oxysporum f. sp. Cubense 1 and 4 after infecting Musa acuminata 0h and 48h.
Organism:
Fusarium oxysporum f. sp. cubense
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16015
4 Samples
Download data: WIG
Series
Accession:
GSE40581
ID:
200040581
18.

Transcriptomic analysis of F. oxysporum Δcon7-1 mutant during in vitro growth

(Submitter supplied) Previous studies have demonstrated the essential role of morphogenetic regulation in Fusarium oxysporum pathogenesis, including processes such as cell-wall biogenesis, cell division and differentiation of infection-like structures. We identified three F. oxysporum genes encoding predicted transcription factors showing significant identities to Magnaporthe oryzae Con7p, Con7-1, plus two identical copies of Con7-2. more...
Organism:
Fusarium oxysporum
Type:
Expression profiling by array
Platform:
GPL15804
6 Samples
Download data: TXT
Series
Accession:
GSE59311
ID:
200059311
19.

Genome wide expression responses of Fusarium oxysporum wt and ΔhapX mutant to iron depleted and iron replete conditions.

(Submitter supplied) Soilborne fungal pathogens cause devastating yield losses, are highly persistent and difficult to control. To culminate infection, these organisms must cope with limited availability of iron. Here we show that the bZIP protein HapX functions as a key regulator of iron homeostasis and virulence in the vascular wilt fungus Fusarium oxysporum. Deletion of hapX does not affect iron uptake, but causes derepression of genes involved in iron-consuming pathways, leading to impaired growth under iron-depleted conditions. more...
Organism:
Fusarium oxysporum
Type:
Expression profiling by array
Platform:
GPL15804
12 Samples
Download data: TXT
Series
Accession:
GSE39325
ID:
200039325
20.

Oligonucleoteide microarray for the identification of potential mycotoxigenic fungi

(Submitter supplied) Mycotoxins are secondary metabolites which are produced by numerous fungi and pose a continuous challenge to the safety and quality of food commodities in South Africa. These toxins have toxicologically relevant effects on humans and animals that eat contaminated foods. In this study, a diagnostic DNA microarray was developed for the identification of the most common food-borne fungi, as well as the genes leading to toxin production. more...
Organism:
Aspergillus; Aspergillus clavatus; Fusarium oxysporum; Fusarium acuminatum; Talaromyces islandicus; Aspergillus versicolor; Penicillium fellutanum; Fusarium globosum; Pseudopithomyces chartarum; Claviceps purpurea; Alternaria alternata; Aspergillus multicolor; Fusarium subglutinans; Fusarium cerealis; Penicillium viridicatum; Penicillium corylophilum; Fusarium verticillioides; Talaromyces rugulosus; Fusarium solani; Stenocarpella maydis; Fusarium incarnatum; Aspergillus amstelodami; Aspergillus parasiticus; Fusarium sambucinum; Curvularia lunata; Fusarium; Talaromyces funiculosus; Bipolaris sorokiniana; Fusarium decemcellulare; Drechslera sp.; Aspergillus chevalieri; Aspergillus niger; Penicillium; Fusarium sporotrichioides; Fusarium graminearum; Penicillium expansum; Fusarium sp.; Fusarium avenaceum; Penicillium italicum; Aspergillus carbonarius; Fusarium anthophilum; Fusarium equiseti
Type:
Expression profiling by array; Other
Platform:
GPL9730
120 Samples
Download data: GPR, TXT
Series
Accession:
GSE19227
ID:
200019227
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