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Items: 4

1.

Monitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Geobacter; Methylosinus; Dehalobacter; Sulfurospirillum; Pseudomonas; Nitrosomonas; Dehalococcoides; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome
Type:
Genome variation profiling by array; Expression profiling by array
Platform:
GPL13409
33 Samples
Download data: PAIR
Series
Accession:
GSE28609
ID:
200028609
2.

Monitoring of functional gene responses to biostimulation from a TCE-contaminated site

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 4 µg of labelled antisense mRNA from 3 groundwater samples were hybridized on the microarray.
Organism:
Geobacter; Pseudomonas; Nitrosomonas; Dehalococcoides; Methylosinus; Dehalobacter; Sulfurospirillum; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome
Type:
Expression profiling by array
Platform:
GPL13409
3 Samples
Download data: PAIR
Series
Accession:
GSE28608
ID:
200028608
3.

Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene diversity present in four trichloroethylene (TCE) contaminated sites under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 2 µg of labelled gDNA from 30 groundwater samples were hybridized on the microarrays.
Organism:
Methylosinus; Dehalococcoides; Shewanella; Pseudomonas; Mycobacterium; Geobacter; groundwater metagenome; Desulfitobacterium; Nitrosomonas; Thauera; Dehalobacter; Sulfurospirillum
Type:
Genome variation profiling by array
Platform:
GPL13409
30 Samples
Download data: PAIR
Series
Accession:
GSE28606
ID:
200028606
4.

NimbleGen_Custom_Chloroethene_array_V02

(Submitter supplied) Format: 12x135K Each probe on the microarray was synthesized in eight replicates, and a total of 5,707 random probes was used to determine the background noise. Chlorinated solvents metabolic capacities (Environmental). The Platform data table reflects a condensed representation of the expression array's replicate features. The .ndf file is linked below as a supplementary file. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. more...
Organism:
Shewanella; Pseudomonas; Methylosinus; Nitrosomonas; Mycobacterium; Geobacter; Thauera; Desulfitobacterium; Dehalobacter; Sulfurospirillum; Dehalococcoides
3 Series
33 Samples
Download data: NDF
Platform
Accession:
GPL13409
ID:
100013409
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db=gds|term=txid33057[Organism:noexp]|query=1|qty=13|blobid=MCID_664babf78e57fe2577414f54|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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