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Items: 1 to 20 of 1614

1.

Modulation of apple leaf trancriptome by Acibenzolar-S-methyl (ASM)

(Submitter supplied) Investigation of whole genome gene expression level changes in leaves of apple seedlings (Golden delicious) 3 days after treatment by Bion 50WG (ASM) versus water.
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
6 Samples
Download data: SF, XLSX
Series
Accession:
GSE262538
ID:
200262538
2.

Modulation of apple leaf trancriptome by Erwinia amylovora infection in Evereste (resistant) and MM106 (susceptible) genotypes

(Submitter supplied) Investigation of whole genome gene expression level changes in leaves of Evereste and MM106 genotypes 6 and 24 hours after infiltration (hpi) by Erwinia amylovora (Ea) versus mock (water + 0,01 % Silwet). This analysis include transcritome comaprison between the two apple genotypes just before inoculation (T0).
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
30 Samples
Download data: SF, XLSX
Series
Accession:
GSE262535
ID:
200262535
3.

Global epigenome analysis reveals the role of histone modifications in the chilling-regulated gene expressions in dormant apple flower buds [RNA-seq]

(Submitter supplied) Bud dormancy – the repeated phase of rest that punctuates periods of growth in the life cycles of many perennial species. In temperate fruit trees, fulfillment of chilling requirement and subsequent heat requirement enable dormant buds to have uniform blooming in field. However, effects of environmental factors such as chilling underlying dormancy release and bud break has not been fully understood. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29947
10 Samples
Download data: TXT
Series
Accession:
GSE171131
ID:
200171131
4.

Global epigenome analysis reveals the role of histone modifications in the chilling-regulated gene expressions in dormant apple flower buds

(Submitter supplied) Bud dormancy – the repeated phase of rest that punctuates periods of growth in the life cycles of many perennial species. In temperate fruit trees, fulfillment of chilling requirement and subsequent heat requirement enable dormant buds to have uniform blooming in field. However, effects of environmental factors such as chilling underlying dormancy release and bud break has not been fully understood. more...
Organism:
Malus domestica
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18137
24 Samples
Download data: WIG
Series
Accession:
GSE128041
ID:
200128041
5.

Modulation of apple leaf transcriptome by QTLs and infection by Venturia inaequalis

(Submitter supplied) Induction of whole genome gene expression level changes in leaves of grafted apple genotypes exhibiting contrasted QTL architecture (from one to a combination of three QTL) after the inoculation of the pathogenic fungus Venturia inaequalis
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
16 Samples
Download data: SF, XLSX
Series
Accession:
GSE250309
ID:
200250309
6.

Modulation of apple leaf trancriptome by tomato cutin monomer extract

(Submitter supplied) Investigation of whole genome gene expression level changes in leaves of apple seedlings (Golden delicious) 3 days after treatment by tomato cutin monomer extract (CME) versus formulation blank (FB). CME is a formulated extract enriched of hydroxy fatty acids from tomato cuticle
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
6 Samples
Download data: SF, XLSX
Series
Accession:
GSE245564
ID:
200245564
7.

Transcriptome and metabolic survey disclose the mode of action of static and dynamic low oxygen postharvest storage strategies to prevent the onset of superficial scald disorder in fruit of ‘Granny Smith’ apple cultivar

(Submitter supplied) To preserve quality feature and ensuring availability of fresh fruit on the market, apples need to be stored. The low temperature applied during storage, beside avoiding important fruit loss, can also promote the development of serious chilling injury type of disorder, such as superficial scald. One of the strategies largely employed to prevent the development of this phenomenon is the control of the storage atmosphere, by lowering down the concentration of oxygen. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31298
36 Samples
Download data: XLSX
Series
Accession:
GSE225233
ID:
200225233
8.

The effect of Epigallocatechin-3-Gallate (EGCG), a main active ingredient in tea residues, on improving fruit quality and prolonging postharvest storage in apple

(Submitter supplied) EGCG, as an active oxygen scavenger, has a significant effect on inhibiting the greasiness of apples. However, the impact of greasiness on fruit storage and how EGCG eliminates this effect, as well as its influence on apple quality formation, have not been clarified. In this study, we found that exogenous application of EGCG effectively improved a series of nutritional growth indicators, including seedling growth status and photosynthetic activity. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
6 Samples
Download data: TXT
Series
Accession:
GSE248662
ID:
200248662
9.

Detection of plant microRNAs in edible-plant based products

(Submitter supplied) Plant-based diets could be a key source of microRNAs in animals. Plant microRNAs are cross-kingdom gene expression regulators that could modulate mammalian gene expression, influencing their physiology. Therefore, it is important to identify the microRNA expression profile of plant foods in order to identify potential target genes and biological functions in the mammalian host. Next-generation sequencing was applied to identify microRNAs in RNA samples derived from nuts (walnut and almond), vegetables (spinach) and fruits (orange, apple, olive, pear, and tomato). more...
Organism:
Solanum lycopersicum; Olea europaea; Pyrus communis; Spinacia oleracea; Malus domestica; Citrus sinensis; Prunus dulcis; Juglans regia
Type:
Non-coding RNA profiling by high throughput sequencing
8 related Platforms
8 Samples
Download data: XLSX
Series
Accession:
GSE234786
ID:
200234786
10.

Comparative transcriptome and metabolomic survey reveal key pathways involved in the control of the chilling injury disorder superficial scald in two apple cultivars, ‘Granny Smith’ and ‘Ladina’

(Submitter supplied) The low temperature normally applied to prevent fruit decay during the storage of apples, can also triggers the onset of a chilling injury disorder known as superficial scald. In this work, the etiology of this disorder and the mechanism of action of two preventing strategies, such as the application of 1-MCP and storage at low oxygen concentration in ‘Granny Smith’ and ‘Ladina’ apple cultivars was investigated. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31298
18 Samples
Download data: XLSX
Series
Accession:
GSE216082
ID:
200216082
11.

microRNA172 targets APETALA2 to regulate anthocyanin biosynthesis

(Submitter supplied) MicroRNA172 (miR172) plays a role in regulating a diverse range of plant developmental processes. However, its role in regulating anthocyanin biosynthesis is unclear. In this study, we show that transgenic apple plants over-expressing miR172 show a reduction in red colouration and anthocyanin accumulation in multiple tissue types. This reduction was consistent with decreased expression of APETALA2 homolog MdAP2_1a (a miR172 target gene), MdMYB10, and targets of MdMYB10, as demonstrated by both RNA-seq and RT-PCR analyses. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
6 Samples
Download data: TXT
Series
Accession:
GSE173297
ID:
200173297
12.

New approaches to the production of certified varieties of apple trees using NGS diagnostics of pathogens

(Submitter supplied) Implementation and evaluation of tests (PCR, ELISA, NGS) for the presence of viruses, viroids and phytoplasma in propagation materials of apple. Research and application of new sanitation techniques using promising antiviral substances, or cryo-knife. Confirmation of health status of sanitated cultivars including use of modern diagnostic methods such as high-throughput sequencing (NGS).
Organism:
Malus domestica
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL18137
16 Samples
Download data: TXT
Series
Accession:
GSE205183
ID:
200205183
13.

Real-time quantitative PCR analysis of 30 apple cyclophilin genes under abiotic stress

(Submitter supplied) Plant cyclophilins are widely involved in a variety of abiotic stress regulation processes. Thirty cyclophilin members were identified from apple and their patterns of response to abiotic stress were examined. Apple seedlings with consistent growth were selected, cultivated under drought stress conditions simulated by PEG6000, sampled according to different time periods, and quickly frozen in liquid nitrogen.Total RNAs of apple plantlets were isolated using an RNA extraction kit (Tiangen, Beijing, China).
Organism:
Malus domestica
Type:
Expression profiling by RT-PCR
Platform:
GPL32690
6 Samples
Download data: TXT
Series
Accession:
GSE214087
ID:
200214087
14.

Real-time quantitative PCR analysis of apple seeds

(Submitter supplied) Apple seeds were subjected to accelerated aging. After 7, 14, and 21 days of aging, embryos were isolated. Part of the embryos were shortly fumigated with nitric oxide (NO). After 48 h of embryos culture (aged embryos or aged embryos treated with NO), embryonic axes were used to extract the total RNA. RT-qPCR were done to analyze the changes in the expression of genes related to seed aging. Short-term (3 h) treatment of embryos isolated from accelerated aged apple seeds (Malus domestica Borkh.) with NO partially reduced the effects of aging. more...
Organism:
Malus domestica
Type:
Expression profiling by RT-PCR
Platform:
GPL32430
18 Samples
Download data: XLS
Series
Accession:
GSE207591
ID:
200207591
15.

Transcriptome changes associated with M9T337 root defense response after 6S-2 colonization and MR5 infection

(Submitter supplied) To study the transcriptional level of M9T337 roots induced by T. asperellum 6S-2, and the mechanism of defense against MR5.
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
12 Samples
Download data: TXT
Series
Accession:
GSE202091
ID:
200202091
16.

Time series transcriptome of Venturia inaequalis (apple scab) infecting Malus domestica (apple)

(Submitter supplied) V. inaequalis causes apple scab disease, the most economically important disease of apples. In this study, we generated a comprehensive RNA-seq transcriptome of V. inaequalis during host colonization of apple, with six in planta time points (12hpi, 24hpi, 2dpi, 3dpi, 5dpi, 7dpi) and one in culture reference (fungus grown on cellophane membranes overlaying potato dextrose agar). Analysis of this transcriptome identified five in planta gene expression clusters or waves corresponding to three specific infection stages: early, mid and mid-late infection of subcuticular biotrophic host-colonization. more...
Organism:
Malus domestica; Venturia inaequalis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL32047 GPL32048
28 Samples
Download data: CSV
Series
Accession:
GSE198244
ID:
200198244
17.

Transcriptomic and GC-MS metabolomic analysis to provide insight into aroma volatile compounds of ‘Granny Smith’ and ‘Jonagold’ apples (Malus domestica)

(Submitter supplied) In order to know more about the expression levels of aroma-related genes involved in the metabolic pathways, transcriptome sequencing of Granny Smith and Jonagold apples was conducted utilizing the Illumina platform. Our study provides new insights on the understanding of transcriptional regulatory mechanisms associated with aroma volatiles formation in apples.
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29987
6 Samples
Download data: TXT
Series
Accession:
GSE176136
ID:
200176136
18.

RNA sequencing of Malus x domestica Borkh. with Botrytis cinerea

(Submitter supplied) Apple is typically stored under low temperature and controlled atmospheric conditions to ensure a year round supply of high quality fruit for the consumer. During storage, losses in quality and quantity occur due to spoilage by postharvest pathogens. One important postharvest pathogen of apple is Botrytis cinerea. The fungus is a broad host necrotroph with a large arsenal of infection strategies able to infect over 1,400 different plant species. more...
Organism:
Malus domestica; Botrytis cinerea
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL31297 GPL31298
36 Samples
Download data: CSV
Series
Accession:
GSE195841
ID:
200195841
19.

The identification of small RNAs differentially expressed in apple buds reveals a potential role of the miR159-MYB regulatory module during dormancy

(Submitter supplied) Winter dormancy is an adaptative mechanism that temperate and boreal trees have developed to protect their meristems against low temperatures. In apple trees (Malus domestica), cold temperatures induce bud dormancy at the end of summer/beginning of the fall. Apple buds stay dormant during winter until they are exposed to a period of cold, after which they can resume growth (budbreak) and initiate flowering in response to warm temperatures in spring. more...
Organism:
Malus domestica
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL31002
12 Samples
Download data: XLS
Series
Accession:
GSE189658
ID:
200189658
20.

The ethylene-auxin crosstalk regulates the postharvest fruit ripening process in apple

(Submitter supplied) The ripening of climacteric fruits, such as apple, is represented by a series of genetically programmed events orchestrated by the action of several hormones. In this work, we investigated the existence of a hormonal crosstalk between ethylene and auxin during the post-harvest ripening of three internationally known apple cultivars: ‘Golden Deli-cious’, ‘Granny Smith’ and ‘Fuji’. The normal climacteric ripening was impaired by the exogenous application of 1-methylcyclopropene (1-MCP) that effectively affected the production of ethylene and the physiological behaviour of specific ethylene-related qual-ity traits, such as fruit texture and the production of volatile organic compounds showed a de-novo accumulation of auxin following the application of 1-MCP. more...
Organism:
Malus domestica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18137
99 Samples
Download data: XLSX
Series
Accession:
GSE182822
ID:
200182822
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