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Items: 5

1.

RNA sequencing unveils very small RNAs with potential regulatory functions in bacteria

(Submitter supplied) RNA sequencing (RNA-seq) is the gold standard for the discovery of small non-coding RNAs. Following a long-standing approach, reads shorter than 16 nucleotides (nt) are removed from the small RNA sequencing libraries or datasets. The serendipitous discovery of a 12 nt-long RNA species capable of modulating the microRNA from which they derive prompted us to challenge this dogma, and by expanding the window of RNA sizes down to 8 nt, to confirm the existence of functional very small RNAs (vsRNAs <16nt). more...
Organism:
Legionella pneumophila; Pseudomonas aeruginosa PAO1; Escherichia coli str. K-12 substr. MG1655; synthetic construct; Salmonella enterica subsp. enterica serovar Typhimurium; Pseudomonas aeruginosa PA7; Staphylococcus aureus
Type:
Non-coding RNA profiling by high throughput sequencing
7 related Platforms
12 Samples
Download data: FA, PDF
Series
Accession:
GSE200758
ID:
200200758
2.

Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray

(Submitter supplied) The PANarray design (GPL13324) contains the genes of eight P. aeruginosa genomes in non-redundant format, thus allowing identification of expression of non-PAO1 and other P. aeruginosa genes.
Organism:
Pseudomonas aeruginosa UCBPP-PA14; Pseudomonas aeruginosa PA7; Pseudomonas aeruginosa; Pseudomonas aeruginosa PACS2; Pseudomonas aeruginosa PAO1; Pseudomonas aeruginosa C3719; Pseudomonas aeruginosa 2192; Pseudomonas aeruginosa LESB58; Pseudomonas aeruginosa AES-1R
Type:
Expression profiling by array
Platform:
GPL13324
8 Samples
Download data: TXT
Series
Accession:
GSE28152
ID:
200028152
3.

Illumina NextSeq 500 (Pseudomonas aeruginosa PA7)

Organism:
Pseudomonas aeruginosa PA7
1 Series
1 Sample
Download data
Platform
Accession:
GPL32163
ID:
100032163
4.

University of Sydney CombiMatrix 12K PANarray

(Submitter supplied) Contains genes from eight Pseudomonas aeruginosa strain genomes: AES-1, PAO1, UCBPP-PA14, PA7, c3719, PA2192, PACS2 and LESB58 (Liverpool Epidemic Strain). Protocol: http://customarrays.com/
Organism:
Pseudomonas aeruginosa UCBPP-PA14; Pseudomonas aeruginosa PAO1; Pseudomonas aeruginosa 2192; Pseudomonas aeruginosa C3719; Pseudomonas aeruginosa PA7; Pseudomonas aeruginosa PACS2; Pseudomonas aeruginosa LESB58; Pseudomonas aeruginosa AES-1R
1 Series
8 Samples
Download data
Platform
Accession:
GPL13324
ID:
100013324
5.

Expo.phase_P.aeruginosa.PA7_sequence

Organism:
Pseudomonas aeruginosa PA7
Source name:
Expo.phase_P.aeruginosa.PA7
Platform:
GPL32163
Series:
GSE200758
Download data: FA
Sample
Accession:
GSM6043297
ID:
306043297
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