GEO DataSets

(Submitter supplied) Herpesviruses are frequently co-present with bacterial infection at multiple sites within the body, including the mouth, gut, and genitourinary tract. The detection of replicating virus in these compartments prompted investigation into the relationship between bacterial infection and Kaposi’s Sarcoma-associated Herpesvirus (KSHV) reactivation. Using a cell line latently infected with KSHV, we examined the ability of crude spent media containing metabolic products from periodontal and gut pathogens to reactivate KSHV. more...

Organism:

Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 7; human papillomavirus 72; Homo sapiens; Simian-Human immunodeficiency virus; Human betaherpesvirus 6; Cucumber mosaic virus; Human gammaherpesvirus 8

Type:

Expression profiling by array

Platform:

GPL19981

7 Samples

Download data: GPR, TXT

(Submitter supplied) The response of human immunodeficiency virus type 1 (HIV-1) quasispecies to antiretroviral therapy is influenced by the ensemble of mutants that composes the evolving population. Low-abundance subpopulations within HIV-1 quasispecies may determine the viral response to the administered drug combinations. However, routine sequencing assays available to clinical laboratories do not recognize HIV-1 minority variants representing less than 25% of the population. more...

Organism:

Simian-Human immunodeficiency virus

Type:

Genome variation profiling by array

Platform:

GPL22707

470 Samples

Download data: CSV, PDF

(Submitter supplied) only viral oligo sequences are available (human oligo sequences unavailable) An 18k array (a later version of the same array with additional human genes) is GPL550. Protocol: unavailable

Organism:

Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 6; Human betaherpesvirus 7; Cucumber mosaic virus; Human gammaherpesvirus 8; Simian-Human immunodeficiency virus; human papillomavirus 72

1 Series

7 Samples

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(Submitter supplied) Each oligonucleotide (whose name corresponded to the queried HIV-1 codon) included a 'C6 amino linker' group [NH2(CH2)6] at its 5'-end, a 15-mer spacer region with either (T) 15 or (TCC)5 sequence and the specific, 13 to 17 nt-long sequence containing the queried codon at its central position. A total of 160 different probes were synthesized and HPLC-purified (Sigma): 154 probes specific to the queried HIV-1 codons, 4 positive controls and 2 negative controls. more...

Organism:

Simian-Human immunodeficiency virus

1 Series

470 Samples

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