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Items: 1 to 20 of 25

1.

Comparative analysis of squamate brains unveils multi-level variation in cerebellar architecture associated with locomotor specialization

(Submitter supplied) We exploited the extraordinary  ecomorphological diversity of squamates to assess  brain phenotypic diversification with respect to locomotor specialization, by integrating transcriptomic data along with other methods. We reveal significant changes in cerebellar morphology as well as dynamic gene expression that all correlate with locomotor behaviours.
Organism:
Python regius; Basiliscus vittatus; Mochlus fernandi; Pogona vitticeps; Trioceros jacksonii; Dasypeltis gansi; Chrysopelea ornata; Pantherophis guttatus; Pseudopus apodus; Eryx colubrinus
Type:
Expression profiling by high throughput sequencing; Other
10 related Platforms
10 Samples
Download data: XLSX
Series
Accession:
GSE139570
ID:
200139570
2.

Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus; Pantherophis guttatus
Type:
Other; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL21577 GPL17021
25 Samples
Download data: BED, BEDGRAPH
Series
Accession:
GSE79048
ID:
200079048
3.

Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan (ChIP-seq)

(Submitter supplied) While the vertebrate body plan is highly conserved amongst all species of this taxon, extreme variations thereof can be documented in snakes, which display both an absence of limbs and an unusually elongated trunk. As Hox genes are strong candidates both for the making and the evolution of this body plan, their comparative study in such a morphologically diverged group is informative regarding their potential causative importance in these processes. more...
Organism:
Mus musculus; Pantherophis guttatus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL17021 GPL21577
9 Samples
Download data: BED, BEDGRAPH, FA
Series
Accession:
GSE79047
ID:
200079047
4.

Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan (4C-seq)

(Submitter supplied) While the vertebrate body plan is highly conserved amongst all species of this taxon, extreme variations thereof can be documented in snakes, which display both an absence of limbs and an unusually elongated trunk. As Hox genes are strong candidates both for the making and the evolution of this body plan, their comparative study in such a morphologically diverged group is informative regarding their potential causative importance in these processes. more...
Organism:
Pantherophis guttatus; Mus musculus
Type:
Other
Platforms:
GPL17021 GPL21577
16 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE79045
ID:
200079045
5.

DNBSEQ-T7 (Pantherophis guttatus)

Organism:
Pantherophis guttatus
Download data
Platform
Accession:
GPL34450
ID:
100034450
6.

HiSeq X Ten (Pantherophis guttatus)

Organism:
Pantherophis guttatus
Download data
Platform
Accession:
GPL34323
ID:
100034323
7.

Illumina NovaSeq 6000 (Pantherophis guttatus)

Organism:
Pantherophis guttatus
Download data
Platform
Accession:
GPL34322
ID:
100034322
8.

Illumina NextSeq 500 (Pantherophis guttatus)

Organism:
Pantherophis guttatus
1 Series
1 Sample
Download data
Platform
Accession:
GPL27698
ID:
100027698
9.

Illumina HiSeq 2500 (Pantherophis guttatus)

Organism:
Pantherophis guttatus
3 Series
15 Samples
Download data
Platform
Accession:
GPL21577
ID:
100021577
10.

RNA seq species 6

Organism:
Pantherophis guttatus
Source name:
Cerebellum
Platform:
GPL27698
Series:
GSE139570
Download data
Sample
Accession:
GSM4143860
ID:
304143860
11.

AT_Pg_Input

Organism:
Pantherophis guttatus
Source name:
anterior trunk
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data
Sample
Accession:
GSM2084508
ID:
302084508
12.

PT_Pg_Input

Organism:
Pantherophis guttatus
Source name:
posterior trunk
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data
Sample
Accession:
GSM2084506
ID:
302084506
13.

FB_Pg_Input

Organism:
Pantherophis guttatus
Source name:
brain
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data
Sample
Accession:
GSM2084505
ID:
302084505
14.

H3K27ac_AT_Pg

Organism:
Pantherophis guttatus
Source name:
anterior trunk
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data: BED, BEDGRAPH
Sample
Accession:
GSM2084504
ID:
302084504
15.

H3K9me3_FB_Pg

Organism:
Pantherophis guttatus
Source name:
brain
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084502
ID:
302084502
16.

H3K27me3_PT_Pg

Organism:
Pantherophis guttatus
Source name:
posterior trunk
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084501
ID:
302084501
17.

H3K27me3_FB_Pg

Organism:
Pantherophis guttatus
Source name:
brain
Platform:
GPL21577
Series:
GSE79047 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084500
ID:
302084500
18.

4C_HPPgcont_d11

Organism:
Pantherophis guttatus
Source name:
control trunk region
Platform:
GPL21577
Series:
GSE79045 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084497
ID:
302084497
19.

4C_HPPgcont_d13

Organism:
Pantherophis guttatus
Source name:
control trunk region
Platform:
GPL21577
Series:
GSE79045 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084496
ID:
302084496
20.

4C_HPPg_d11

Organism:
Pantherophis guttatus
Source name:
hemipenes
Platform:
GPL21577
Series:
GSE79045 GSE79048
Download data: BEDGRAPH
Sample
Accession:
GSM2084493
ID:
302084493
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