vsig10 V-set and immunoglobulin domain containing 10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: vsig10provided by ZNC
Official Full Name: V-set and immunoglobulin domain containing 10provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7476
See related: Ensembl:ENSDARG00000058605 AllianceGenome:ZFIN:ZDB-GENE-030131-7476
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj20c09; wu:fj20c09; si:ch73-13b6.3
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in EVL; ectoderm; otic vesicle; peripheral olfactory organ; and pharynx. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (12562881..12586888, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (12062664..12086671, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: V-set and immunoglobulin domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100094.2 → NP_001093564.2 V-set and immunoglobulin domain-containing protein 10 precursor

See identical proteins and their annotated locations for NP_001093564.2

Status: PROVISIONAL

Source sequence(s)

CU638770

UniProtKB/Swiss-Prot

B0CLX4

Related

ENSDARP00000133069.2, ENSDART00000162780.2

Conserved Domains (4) summary

smart00410
Location:324 → 404

IG_like; Immunoglobulin like

cd00096
Location:331 → 335

Ig; Ig strand B [structural motif]

pfam13927
Location:133 → 203

Ig_3; Immunoglobulin domain

cl11960
Location:32 → 104

Ig; Immunoglobulin domain