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Fam174b family with sequence similarity 174, member B [ Mus musculus (house mouse) ]

Gene ID: 100038347, updated on 17-Aug-2024

Summary

Official Symbol
Fam174bprovided by MGI
Official Full Name
family with sequence similarity 174, member Bprovided by MGI
Primary source
MGI:MGI:3698178
See related
Ensembl:ENSMUSG00000078670 AllianceGenome:MGI:3698178
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus and plasma membrane. Is expressed in Meckel's cartilage and skeleton. Orthologous to human FAM174B (family with sequence similarity 174 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lung adult (RPKM 67.0), heart adult (RPKM 55.0) and 22 other tissues See more
Orthologs
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Genomic context

Location:
7 D1; 7 42.24 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (73390055..73426667)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (73740307..73776919)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Smad nuclear interacting protein 1 pseudogene Neighboring gene isopentenyl-diphosphate delta isomerase, pseudogene 4 Neighboring gene STARR-seq mESC enhancer starr_19198 Neighboring gene predicted gene, 30236 Neighboring gene inositol polyphosphate multikinase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC31276

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in Golgi organization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162532.1NP_001156004.1  membrane protein FAM174B precursor

    See identical proteins and their annotated locations for NP_001156004.1

    Status: VALIDATED

    Source sequence(s)
    AC136004, BC110691
    Consensus CDS
    CCDS52275.1
    UniProtKB/Swiss-Prot
    Q2NLC2, Q8K064
    Related
    ENSMUSP00000103080.3, ENSMUST00000107456.4
    Conserved Domains (1) summary
    pfam06679
    Location:28152
    DUF1180; Protein of unknown function (DUF1180)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    73390055..73426667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)