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Gm10406 predicted gene 10406 [ Mus musculus (house mouse) ]

Gene ID: 100038847, updated on 17-Aug-2024

Summary

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Official Symbol
Gm10406provided by MGI
Official Full Name
predicted gene 10406provided by MGI
Primary source
MGI:MGI:3711272
See related
Ensembl:ENSMUSG00000093985 AllianceGenome:MGI:3711272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in CNS E18 (RPKM 3.0), whole brain E14.5 (RPKM 1.8) and 12 other tissues See more
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Genomic context

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See Gm10406 in Genome Data Viewer
Location:
14 A2; 14 4.16 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15441191..15463658)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7006115..7028582, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3696 Neighboring gene predicted gene 3685 Neighboring gene STARR-seq mESC enhancer starr_35828 Neighboring gene predicted gene, 53833 Neighboring gene predicted gene 3667

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
alpha7-takusan
Names
alpha10-takusan
alpha8-takusan
alpha9-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164727.1 → NP_001158199.1  alpha7-takusan

    See identical proteins and their annotated locations for NP_001158199.1

    Status: VALIDATED

    Source sequence(s)
    AC164618
    Consensus CDS
    CCDS49396.1
    UniProtKB/TrEMBL
    A6NAS4, A6NAS5, Q7TMK7
    Related
    ENSMUSP00000130661.3, ENSMUST00000170738.3
    Conserved Domains (1) summary
    pfam04822
    Location:50 → 125
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    15441191..15463658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315704.3 → XP_017171193.1  alpha7-takusan isoform X6

  2. XM_017315705.2 → XP_017171194.1  alpha7-takusan isoform X7

  3. XM_017315703.2 → XP_017171192.1  alpha7-takusan isoform X4

  4. XM_030247547.1 → XP_030103407.1  alpha7-takusan isoform X5

  5. XM_017315706.3 → XP_017171195.1  alpha7-takusan isoform X8

  6. XM_036158296.1 → XP_036014189.1  alpha7-takusan isoform X2

  7. XM_017315702.2 → XP_017171191.1  alpha7-takusan isoform X3

  8. XM_011244721.2 → XP_011243023.1  alpha7-takusan isoform X9

    UniProtKB/TrEMBL
    A0AA74KSW7
    Conserved Domains (1) summary
    pfam04822
    Location:107 → 187
    Takusan

  9. XM_011244720.1 → XP_011243022.1  alpha7-takusan isoform X1

    UniProtKB/TrEMBL
    A0AA74KT48, A0AA74KUR0
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

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