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1700036A12Rik RIKEN cDNA 1700036A12 gene [ Mus musculus (house mouse) ]

Gene ID: 100040447, updated on 17-Aug-2024

Summary

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Official Symbol
1700036A12Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700036A12 geneprovided by MGI
Primary source
MGI:MGI:1920548
See related
AllianceGenome:MGI:1920548
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 1700036A12Rik in Genome Data Viewer
Location:
9 B; 9 32.89 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (60675191..60677558)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (60767909..60770276)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 49 Neighboring gene STARR-seq mESC enhancer starr_24323 Neighboring gene La ribonucleoprotein 6, translational regulator Neighboring gene STARR-seq mESC enhancer starr_24324 Neighboring gene STARR-seq mESC enhancer starr_24325 Neighboring gene STARR-seq mESC enhancer starr_24327 Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats Neighboring gene predicted gene 9869 Neighboring gene STARR-positive B cell enhancer ABC_E2892 Neighboring gene predicted gene, 33643

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    60675191..60677558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001779186.1 RNA Sequence

  2. XR_001779187.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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