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Potefam3a POTE ankyrin domain family member 3A [ Mus musculus (house mouse) ]

Gene ID: 100040599, updated on 2-Nov-2024

Summary

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Official Symbol
Potefam3aprovided by MGI
Official Full Name
POTE ankyrin domain family member 3Aprovided by MGI
Primary source
MGI:MGI:3796981
See related
Ensembl:ENSMUSG00000074449 AllianceGenome:MGI:3796981
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Poteb; Pote3a; Gm15319
Summary
Orthologous to human POTEJ (POTE ankyrin domain family member J). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 19.4) and frontal lobe adult (RPKM 0.7) See more
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Genomic context

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See Potefam3a in Genome Data Viewer
Location:
8 A1.3; 8 10.35 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20078078..20103616)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20337664..20363202, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 11 pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-seq mESC enhancer starr_20880 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20877 Neighboring gene STARR-seq mESC enhancer starr_20876 Neighboring gene STARR-seq mESC enhancer starr_20875 Neighboring gene cadherin 11 pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-seq mESC enhancer starr_20874 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19856799-19857099 Neighboring gene predicted gene, 40468

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC183705

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-specific gene with ankyrin repeats and PEST domain-like
Names
POTE ankyrin domain family member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177408.1 → NP_001170879.1  testis-specific gene with ankyrin repeats and PEST domain-like

    Status: VALIDATED

    Source sequence(s)
    AC152164
    Consensus CDS
    CCDS52499.1
    UniProtKB/TrEMBL
    B9EK96, E9Q637
    Related
    ENSMUSP00000081059.6, ENSMUST00000084046.6
    Conserved Domains (4) summary
    cd00204
    Location:79 → 203
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:89 → 180
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:54 → 105
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:86 → 115
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20078078..20103616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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