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Gm3650 predicted gene 3650 [ Mus musculus (house mouse) ]

Gene ID: 100042074, updated on 17-Aug-2024

Summary

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Official Symbol
Gm3650provided by MGI
Official Full Name
predicted gene 3650provided by MGI
Primary source
MGI:MGI:3781826
See related
AllianceGenome:MGI:3781826
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E14 (RPKM 5.3), bladder adult (RPKM 4.9) and 28 other tissues See more
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Genomic context

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See Gm3650 in Genome Data Viewer
Location:
18 B3; 18 23.31 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (43604822..43608597)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (43471757..43475529)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene dihydropyrimidinase-like 3 Neighboring gene predicted gene, 41714 Neighboring gene eukaryotic translation initiation factor 3, subunit J2 Neighboring gene janus kinase and microtubule interacting protein 2 Neighboring gene STARR-seq mESC enhancer starr_44453 Neighboring gene STARR-seq mESC enhancer starr_44454 Neighboring gene serine peptidase inhibitor, Kazal type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
predicted gene, 100042074; spatacsin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    43604822..43608597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526420.5 → XP_006526483.1  spatacsin-like

    See identical proteins and their annotated locations for XP_006526483.1

    Conserved Domains (1) summary
    pfam14649
    Location:56 → 251
    Spatacsin_C; Spatacsin C-terminus
Nucleotide Protein Strain
Heading Accession and Version

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