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Gm3739 predicted gene 3739 [ Mus musculus (house mouse) ]

Gene ID: 100042235, updated on 17-Aug-2024

Summary

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Official Symbol
Gm3739provided by MGI
Official Full Name
predicted gene 3739provided by MGI
Primary source
MGI:MGI:3781914
See related
Ensembl:ENSMUSG00000091472 AllianceGenome:MGI:3781914
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in CNS E18 (RPKM 2.8), whole brain E14.5 (RPKM 1.9) and 16 other tissues See more
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Genomic context

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See Gm3739 in Genome Data Viewer
Location:
14 A2; 14 4.31 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15153372..15265000)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7292808..7316401, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930521O11 gene Neighboring gene predicted gene, 41090 Neighboring gene predicted gene 5797 Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3727 Neighboring gene predicted gene, 16525 Neighboring gene esterase D/formylglutathione hydrolase pseudogene Neighboring gene predicted gene 16434 Neighboring gene predicted gene 3512

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
uncharacterized protein LOC100042235
Names
alpha20-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378725.1 → NP_001365654.1  uncharacterized protein LOC100042235

    Status: VALIDATED

    Source sequence(s)
    AC132423
    UniProtKB/TrEMBL
    A6NAS0, A6NAT7
    Related
    ENSMUSP00000159766.1, ENSMUST00000249469.1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    15153372..15265000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158321.1 → XP_036014214.1  uncharacterized protein LOC100042235 isoform X1

    UniProtKB/TrEMBL
    A0AA74KSZ2
    Related
    ENSMUSP00000159767.1, ENSMUST00000249470.1
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 132
    Takusan

  2. XM_036158322.1 → XP_036014215.1  uncharacterized protein LOC100042235 isoform X2

  3. XM_036158323.1 → XP_036014216.1  uncharacterized protein LOC100042235 isoform X3

RNA

  1. XR_004938349.1 RNA Sequence

  2. XR_004938351.1 RNA Sequence

  3. XR_004938350.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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