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PKNOX1 PBX/knotted 1 homeobox 1 [ Equus caballus (horse) ]

Gene ID: 100057650, updated on 17-Aug-2024

Summary

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Official Symbol
PKNOX1provided by VGNC
Official Full Name
PBX/knotted 1 homeobox 1provided by VGNC
Primary source
VGNC:VGNC:21500
See related
Ensembl:ENSECAG00000010284
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PKNOX1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (39612807..39673470)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene cystathionine beta-synthase Neighboring gene U2 small nuclear RNA auxiliary factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein PKNOX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    39612807..39673470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023630238.1 → XP_023486006.1  homeobox protein PKNOX1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2L5P0, F6RHT9
    Related
    ENSECAP00000074136.1, ENSECAT00000091930.1
    Conserved Domains (2) summary
    pfam05920
    Location:277 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 164
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  2. XM_023630240.1 → XP_023486008.1  homeobox protein PKNOX1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2L5P0
    Conserved Domains (2) summary
    pfam05920
    Location:276 → 315
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 164
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  3. XM_023630241.1 → XP_023486009.1  homeobox protein PKNOX1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2L5P0
    Conserved Domains (2) summary
    pfam05920
    Location:220 → 259
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 121
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  4. XM_023630239.1 → XP_023486007.1  homeobox protein PKNOX1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2L5P0, F6RHT9
    Conserved Domains (2) summary
    pfam05920
    Location:277 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 164
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
Nucleotide Protein
Heading Accession and Version

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