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WDR4 WD repeat domain 4 [ Equus caballus (horse) ]

Gene ID: 100057729, updated on 17-Aug-2024

Summary

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Official Symbol
WDR4provided by VGNC
Official Full Name
WD repeat domain 4provided by VGNC
Primary source
VGNC:VGNC:24996
See related
Ensembl:ENSECAG00000019212
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See WDR4 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (39543101..39564248, complement)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene solute carrier family 37 member 1 Neighboring gene phosphodiesterase 9A Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene PBX/knotted 1 homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA (guanine-N7)-methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of tRNA methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    39543101..39564248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023630233.1 → XP_023486001.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X2

    UniProtKB/TrEMBL
    A0A9L0SA81
    Conserved Domains (2) summary
    sd00039
    Location:58 → 96
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:90 → 250
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_001916644.4 → XP_001916679.2  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SA81
    Related
    ENSECAP00000071773.1, ENSECAT00000092171.1
    Conserved Domains (2) summary
    sd00039
    Location:66 → 103
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:138 → 298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_005606167.3 → XP_005606224.2  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X3

    Conserved Domains (2) summary
    sd00039
    Location:6 → 44
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:38 → 198
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_023630235.1 → XP_023486003.1  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X3

    Conserved Domains (2) summary
    sd00039
    Location:6 → 44
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:38 → 198
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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