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LINC00892 long intergenic non-protein coding RNA 892 [ Homo sapiens (human) ]

Gene ID: 100128420, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00892provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 892provided by HGNC
Primary source
HGNC:HGNC:48578
See related
Ensembl:ENSG00000233093 AllianceGenome:HGNC:48578
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 1.4), appendix (RPKM 1.0) and 21 other tissues See more
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Genomic context

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Location:
Xq26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (136639543..136642429)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (134948285..134951171)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (135721702..135724588)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene vestigial like family member 1 Neighboring gene microRNA 934 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29991 Neighboring gene RNA, U6 small nuclear 320, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29992 Neighboring gene CD40 ligand Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29993 Neighboring gene Rac/Cdc42 guanine nucleotide exchange factor 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29994 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21029 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21030 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:135849488-135849656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29995 Neighboring gene RNA, U6 small nuclear 972, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038461.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BG189095, BX112139, CD639382
    Related
    ENST00000454385.8

  2. NR_038462.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    BG189095, BX112139, CD639382, CD699893
    Related
    ENST00000429841.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    136639543..136642429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    134948285..134951171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases