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NEBL-AS1 NEBL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128511, updated on 10-Oct-2023

Summary

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Official Symbol
NEBL-AS1provided by HGNC
Official Full Name
NEBL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44899
See related
Ensembl:ENSG00000231920 AllianceGenome:HGNC:44899
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 4.2), brain (RPKM 3.2) and 6 other tissues See more
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Genomic context

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See NEBL-AS1 in Genome Data Viewer
Location:
10p12.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (21173990..21174923)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (21192689..21193622)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (21462919..21463852)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene nebulette Neighboring gene ReSE screen-validated silencer GRCh37_chr10:21322529-21322705 Neighboring gene eukaryotic translation initiation factor 4B pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:21373491-21373644 Neighboring gene Sharpr-MPRA regulatory region 12489 Neighboring gene nucleophosmin 1 pseudogene 30 Neighboring gene NANOG hESC enhancer GRCh37_chr10:21448091-21448641 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:21449895-21450799 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:21450800-21451703 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21462498-21463388 Neighboring gene Sharpr-MPRA regulatory region 12641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3120 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:21571427-21572103 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21570748-21571426 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21574449-21575208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21575969-21576728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:21581467-21582666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21585759-21586559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3121 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:21598312-21598930 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21625535-21626086 Neighboring gene RNA, U6 small nuclear 15, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21645067-21645566 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21651599-21652196 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21652197-21652792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21661731-21662232 Neighboring gene long intergenic non-protein coding RNA 2643

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. Oshikawa M, et al. DNA Res, 2008 Jun 30. PMID 18487259, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046283.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AB371527, AW204239

  2. NR_046284.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a different 5'-most exon compared to variant 1.
    Source sequence(s)
    AW204239, BX091902
    Related
    ENST00000417845.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    21173990..21174923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    21192689..21193622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases