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SPICP4 Spi-C transcription factor pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 100128803, updated on 28-Oct-2024

Summary

Official Symbol
SPICP4provided by HGNC
Official Full Name
Spi-C transcription factor pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:56812
See related
Ensembl:ENSG00000250020 AllianceGenome:HGNC:56812
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See SPICP4 in Genome Data Viewer
Location:
5p15.33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (58175..59069)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (48762..49656)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (58290..59184)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900928 Neighboring gene uncharacterized LOC105374602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:51413-52326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72025-72555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:77366-78265 Neighboring gene Sharpr-MPRA regulatory region 259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:90483-91322 Neighboring gene NANOG hESC enhancer GRCh37_chr5:99879-100414 Neighboring gene pleckstrin homology and RhoGEF domain containing G4B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:137535-138040 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:159786-160286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:160287-160787 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:169157-170356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170845-171358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171359-171872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:181876-182376 Neighboring gene Sharpr-MPRA regulatory region 15179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22268 Neighboring gene Sharpr-MPRA regulatory region 11960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22270 Neighboring gene uncharacterized LOC124900929 Neighboring gene leucine rich repeat containing 14B

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021873.2 

    Range
    101..995
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    58175..59069
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    48762..49656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)