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LOC100128885 uncharacterized LOC100128885 [ Homo sapiens (human) ]

Gene ID: 100128885, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100128885
Gene description
uncharacterized LOC100128885
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC100128885 in Genome Data Viewer
Location:
7q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (64574695..64618589)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (65782205..65826065)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64035073..64078967)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene PAGE family member 4 pseudogene Neighboring gene IgLON family member 5 pseudogene Neighboring gene uncharacterized LOC124901657 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:64035152-64035652 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene BNIP3 pseudogene 44 Neighboring gene uncharacterized LOC124901656 Neighboring gene uncharacterized LOC105375326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26062 Neighboring gene zinc finger protein 107 Neighboring gene BCL2 interacting protein 3 pseudogene 11 Neighboring gene microRNA 6839

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ43440

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077227.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016769, AK125429

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    64574695..64618589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    65782205..65826065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_009320.1: Suppressed sequence

    Description
    NG_009320.1: This RefSeq was permanently suppressed because it is now thought that this gene is not a pseudogene but a transcribed gene with no protein product..
Nucleotide Protein
Heading Accession and Version

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