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LINC01960 long intergenic non-protein coding RNA 1960 [ Homo sapiens (human) ]

Gene ID: 100128905, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01960provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1960provided by HGNC
Primary source
HGNC:HGNC:52785
See related
Ensembl:ENSG00000260868 AllianceGenome:HGNC:52785
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q31.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (174025280..174027158)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (174511623..174513501)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (174890008..174891886)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12117 Neighboring gene ribosomal protein L5 pseudogene 7 Neighboring gene Sp3 transcription factor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16769 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:174827792-174828615 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:174828616-174829438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12120 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12121 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:174857477-174857650 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16770 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:174888471-174889670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:174901892-174902392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:174902393-174902893 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:174904545-174904945 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:174914257-174914460 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:174916218-174917417 Neighboring gene ribosomal protein SA pseudogene 24 Neighboring gene uncharacterized LOC105373746

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136175.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI677644, BC068274, BX091417
    Related
    ENST00000563759.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    174025280..174027158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    174511623..174513501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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