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LINC03062 long intergenic non-protein coding RNA 3062 [ Homo sapiens (human) ]

Gene ID: 100129066, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03062provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3062provided by HGNC
Primary source
HGNC:HGNC:56369
See related
Ensembl:ENSG00000237372 AllianceGenome:HGNC:56369
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC03062 in Genome Data Viewer
Location:
9q22.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (89639783..89719759)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (101803707..101884333)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (92254698..92334674)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902207 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92167973-92168574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28554 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92179407-92179906 Neighboring gene uncharacterized LOC105376139 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92218738-92219636 Neighboring gene NANOG hESC enhancer GRCh37_chr9:92226260-92226808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92229340-92229881 Neighboring gene growth arrest and DNA damage inducible gamma Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92254441-92255010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92263300-92263809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92269903-92270434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92276688-92277224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277225-92277762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277763-92278299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92290615-92291265 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92291266-92291915 Neighboring gene VISTA enhancer hs1339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92300659-92301230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20017 Neighboring gene uncharacterized LOC105376140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313261-92313762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313763-92314262 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92316238-92317437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92327190-92327690 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92332512-92332723 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92450186-92450697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92458811-92459312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92459313-92459812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92493341-92493841 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92494129-92494294 Neighboring gene uncharacterized LOC107987032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28559 Neighboring gene uncharacterized LOC101927823

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ42342, FLJ44435

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024280.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK124333, AK126399, AL161910, AL606807
    Related
    ENST00000617436.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    89639783..89719759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    101803707..101884333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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