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SLC35C2P1 SLC35C2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100129483, updated on 17-Sep-2024

Summary

Official Symbol
SLC35C2P1provided by HGNC
Official Full Name
SLC35C2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:54894
See related
AllianceGenome:HGNC:54894
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See SLC35C2P1 in Genome Data Viewer
Location:
Xp22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (16897360..16898521, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (16479879..16481040, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (16915483..16916644, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene taxilin gamma Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29456 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20681 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20682 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:16888501-16889179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29457 Neighboring gene RB binding protein 7, chromatin remodeling factor Neighboring gene RNA, U4 small nuclear 6, pseudogene Neighboring gene CRISPRi-validated cis-regulatory element chrX.345 Neighboring gene RALBP1 associated Eps domain containing 2 Neighboring gene MPRA-validated peak7360 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chrX:17044716-17044974 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene chromobox 1 pseudogene 2

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022585.3 

    Range
    101..1262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    16897360..16898521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    16479879..16481040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)