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ETDB embryonic testis differentiation homolog B [ Homo sapiens (human) ]

Gene ID: 100129515, updated on 17-Sep-2024

Summary

Official Symbol
ETDBprovided by HGNC
Official Full Name
embryonic testis differentiation homolog Bprovided by HGNC
Primary source
HGNC:HGNC:44269
See related
Ensembl:ENSG00000224107 AllianceGenome:HGNC:44269
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ETDA; LINC00633
Expression
Restricted expression toward testis (RPKM 5.6) See more
Orthologs
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Genomic context

See ETDB in Genome Data Viewer
Location:
Xq26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135118955..135120526, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133444747..133446318, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134252881..134254454, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nucleolin pseudogene 2 Neighboring gene small integral membrane protein 10 like 2B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21018 Neighboring gene Sharpr-MPRA regulatory region 8062 Neighboring gene SMIM10L2B antisense RNA 1 Neighboring gene zinc finger protein 449 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
embryonic testis differentiation protein homolog B
Names
Embryonic testis differentiation protein homolog A
Embryonic testis differentiation protein homolog B-like
long intergenic non-protein coding RNA 633

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355519.1NP_001342448.1  embryonic testis differentiation protein homolog B

    Status: VALIDATED

    Source sequence(s)
    AI015085, AY730280, BX106414
    Consensus CDS
    CCDS87781.1
    UniProtKB/Swiss-Prot
    P0DPP9, Q3ZM63
    Related
    ENSP00000490943.1, ENST00000423661.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    135118955..135120526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024452315.2XP_024308083.1  embryonic testis differentiation protein homolog B isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    133444747..133446318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054326272.1XP_054182247.1  embryonic testis differentiation protein homolog B isoform X1