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LINC00910 long intergenic non-protein coding RNA 910 [ Homo sapiens (human) ]

Gene ID: 100130581, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00910provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 910provided by HGNC
Primary source
HGNC:HGNC:44361
See related
Ensembl:ENSG00000188825 AllianceGenome:HGNC:44361
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00910 in Genome Data Viewer
Location:
17q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (43369845..43388898, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (44219617..44238672, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41447213..41466266, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41382086-41382759 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41392761-41393398 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41393399-41394036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:41399501-41400008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41400009-41400516 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41400517-41401024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12240 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8551 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:41428482-41429681 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:41437411-41438106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8553 Neighboring gene Sharpr-MPRA regulatory region 625 Neighboring gene U2 spliceosomal RNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41445663-41446502 Neighboring gene uncharacterized LOC105371785 Neighboring gene uncharacterized LOC124904007 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41464317-41464832 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41464833-41465348 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41465639-41466392 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41466393-41467146 Neighboring gene RNA, U2 small nuclear 4, pseudogene Neighboring gene RNA, U6 small nuclear 1137, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41476485-41476988 Neighboring gene ADP ribosylation factor like GTPase 4D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation. Wu SF, et al. Proc Natl Acad Sci U S A, 2020 Jun 23. PMID 32513696, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • CTD-3014M21.4

Clone Names

  • FLJ18727, FLJ41591, DKFZp686H1819

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027412.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AC087650, BC035366
    Related
    ENST00000341011.11

  2. NR_027413.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC087650
    Related
    ENST00000592135.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    43369845..43388898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    44219617..44238672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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