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TSTD3 thiosulfate sulfurtransferase like domain containing 3 [ Homo sapiens (human) ]

Gene ID: 100130890, updated on 22-Oct-2024

Summary

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Official Symbol
TSTD3provided by HGNC
Official Full Name
thiosulfate sulfurtransferase like domain containing 3provided by HGNC
Primary source
HGNC:HGNC:40910
See related
Ensembl:ENSG00000279170 AllianceGenome:HGNC:40910
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 1.4), prostate (RPKM 1.1) and 25 other tissues See more
Orthologs
all
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Genomic context

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See TSTD3 in Genome Data Viewer
Location:
6q16.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (99521049..99587775)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (100695384..100761219)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (99968925..100035651)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:99872987-99874186 Neighboring gene PNISR antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr6:99904596-99905315 Neighboring gene PNN interacting serine and arginine rich protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17417 Neighboring gene ubiquitin specific peptidase 45 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:99962307-99963214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:99963215-99964120 Neighboring gene uncharacterized LOC124901365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24860 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:100023517-100023714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24863 Neighboring gene CCNC and PRDM13 intergenic region DNase I hypersensitve site DHS6S1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17421 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100051429-100052268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100061850-100062398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17423 Neighboring gene cyclin C Neighboring gene ribosomal protein S3 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:100097329-100097949 Neighboring gene PR/SET domain 13 Neighboring gene Sharpr-MPRA regulatory region 7231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:100271711-100272281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:100379521-100380020 Neighboring gene melanin concentrating hormone receptor 2 Neighboring gene MCHR2 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Other Names

  • rhodanese domain-containing protein 3
  • thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
  • thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3

Clone Names

  • DKFZp781B0241

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_197367.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784
    Related
    ENST00000607332.2

  2. NR_197368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  3. NR_197369.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  4. NR_197370.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  5. NR_197371.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  6. NR_197372.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  7. NR_197373.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  8. NR_197374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784
    Related
    ENST00000651400.1

  9. NR_197375.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  10. NR_197376.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  11. NR_197377.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784
    Related
    ENST00000652704.1

  12. NR_197378.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  13. NR_197379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  14. NR_197380.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  15. NR_197381.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  16. NR_197382.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  17. NR_197383.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  18. NR_197384.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  19. NR_197385.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  20. NR_197386.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

  21. NR_197387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137784

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    99521049..99587775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    100695384..100761219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001195131.2: Suppressed sequence

    Description
    NM_001195131.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H0UI37.1 GenPept UniProtKB/Swiss-Prot:H0UI37

Gene LinkOut

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Chemical Information
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Research Materials